X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Fembl_mapping.xml;fp=resources%2Fembl_mapping.xml;h=0000000000000000000000000000000000000000;hb=74393b51f368cb9f58589472d432a433d9c4386d;hp=3b80821d4e4972fa6d04dc9836eb6fffbdb00a16;hpb=7a0d503181fe41452120a8a02ca63476392aa08c;p=jalview.git

diff --git a/resources/embl_mapping.xml b/resources/embl_mapping.xml
deleted file mode 100644
index 3b80821..0000000
--- a/resources/embl_mapping.xml
+++ /dev/null
@@ -1,139 +0,0 @@
-<?xml version="1.0"?>
-<!--
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *  
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
--->
-<mapping xmlns="http://castor.exolab.org/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://castor.exolab.org/ ../schemas/castor-mapping.xsd">
-<!--
-	History: Originally created from EMBL_common_V1.0
-	Updated on 24th April 2007 for WsDBFetch Service move to EMBL_Services_V1.1.xsd
-	Updated May 2016 for EMBL XML 1.2 JAL-2113 JAL-2114
-	  see ftp://ftp.sra.ebi.ac.uk/meta/xsd/sra_1_5/ENA.embl.xsd
-	  see http://www.ebi.ac.uk/ena/submit/data-formats
-	-->
-	<class name="jalview.datamodel.xdb.embl.EmblFile">
-		<map-to xml="ROOT"/>
-		<field name="text" type="string">
-			<bind-xml node="text"/>
-		</field>
-		<field name="entries" type="jalview.datamodel.xdb.embl.EmblEntry" collection="vector">
-			<bind-xml name="entry"/>
-		</field>
-		<field name="errors" type="jalview.datamodel.xdb.embl.EmblError" collection="vector">
-			<bind-xml name="Error"/>
-		</field>
-	</class>
-	<class name="jalview.datamodel.xdb.embl.EmblEntry">
-		<field name="accession" type="string">
-			<bind-xml name="accession" node="attribute"/>
-		</field>
-		<!-- 
-		    in EMBL XML 1.2 sequence/@version became entry/version 
-		    entry/@version became entry/@entryVersion
-		-->
-		<field name="sequenceVersion" type="string">
-			<bind-xml name="version" node="attribute"/>
-		</field>
-		<field name="entryVersion" type="string">
-			<bind-xml name="entryVersion" node="attribute"/>
-		</field>
-		<field name="dataClass" type="string">
-			<bind-xml name="dataClass" node="attribute"/>
-		</field>
-		<field name="taxonomicDivision" type="string">
-			<bind-xml name="taxonomicDivision" node="attribute"/>
-		</field>
-		<field name="moleculeType" type="string">
-			<bind-xml name="moleculeType" node="attribute"/>
-		</field>
-		<field name="sequenceLength" type="string">
-			<bind-xml name="sequenceLength" node="attribute"/>
-		</field>
-		<field name="topology" type="string">
-			<bind-xml name="topology" node="attribute" location="type"/>
-		</field>
-		<field name="firstPublicDate" type="string">
-			<bind-xml name="firstPublic" node="attribute"/>
-		</field>
-		<field name="firstPublicRelease" type="string">
-			<bind-xml name="firstPublicRelease" node="attribute"/>
-		</field>
-		<field name="lastUpdatedDate" type="string">
-			<bind-xml name="lastUpdated" node="attribute"/>
-		</field>
-		<field name="lastUpdatedRelease" type="string">
-			<bind-xml name="lastUpdatedRelease" node="attribute"/>
-		</field>
-		<field name="description" type="string">
-			<bind-xml name="description" node="element"/>
-		</field>
-		<field name="keywords" type="string" collection="vector">
-			<bind-xml name="keyword" node="element"/>
-		</field>
-		<field name="features" type="jalview.datamodel.xdb.embl.EmblFeature" collection="vector">
-			<bind-xml name="feature"/>
-		</field>
-		<field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
-			<bind-xml name="xref" />
-		</field>
-		<field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
-			<bind-xml name="sequence"/>
-		</field>
-	</class>
-	<class name="jalview.datamodel.xdb.embl.EmblSequence">
-		<field name="sequence" type="string">
-			<bind-xml node="text"/>
-		</field>
-	</class>
-	<class name="jalview.datamodel.xdb.embl.EmblFeature" verify-constructable="false">
-		<field name="name" type="string">
-			<bind-xml name="name" node="attribute"/>
-		</field>
-		<field name="location" type="string">
-			<bind-xml name="location" node="attribute"/>
-		</field>
-		<field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
-			<bind-xml name="xref" node="element"/>
-		</field>
-		<field name="qualifiers" type="jalview.datamodel.xdb.embl.Qualifier" collection="vector">
-			<bind-xml name="qualifier"/>
-		</field>					
-	</class>
-	<class name="jalview.datamodel.DBRefEntry" verify-constructable="false">
-		<field name="accessionId" type="java.lang.String">
-			<bind-xml name="id" node="attribute"/>
-		</field>
-		<field name="source" type="java.lang.String"> 
-			<bind-xml name="db" node="attribute"/>
-		</field>
-		<field name="version" type="string">
-			<bind-xml name="secondaryId" node="attribute"/>
-		</field>
-	</class>
-	<class  name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
-		<field name="name">
-			<bind-xml name="name" node="attribute"/>
-		</field>
-		<field name="evidence" type="string" collection="array">
-			<bind-xml name="evidence" node="element"/>
-		</field>
-		<field name="values" type="string" collection="array">
-			<bind-xml name="value" node="element"/>
-		</field>
-	</class>
-</mapping>