X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Fembl_mapping.xml;h=7a1f585fab38089d560525f9a5b2e16843a16eeb;hb=242f9ae1fe04864ca04c42d7a88a7e3976fae10a;hp=7238e89b7c058c92c434b8ea5ddfc437ba70e90a;hpb=0879ca19b6df4983f82521a479b848526b2d14d4;p=jalview.git

diff --git a/resources/embl_mapping.xml b/resources/embl_mapping.xml
index 7238e89..7a1f585 100644
--- a/resources/embl_mapping.xml
+++ b/resources/embl_mapping.xml
@@ -1,7 +1,27 @@
 <?xml version="1.0"?>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * 
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <mapping xmlns="http://castor.exolab.org/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://castor.exolab.org/ castor-mapping.xsd">
-	<!-- -->
+	xsi:schemaLocation="http://castor.exolab.org/ ../schemas/castor-mapping.xsd">
+<!--
+	History: Originally created from EMBL_common_V1.0
+	Updated on 24th April 2007 for WsDBFetch Service move to EMBL_Services_V1.1.xsd
+	-->
 	<class name="jalview.datamodel.xdb.embl.EmblFile">
 		<map-to xml="EMBL_Services"/>
 		<field name="entries" type="jalview.datamodel.xdb.embl.EmblEntry" collection="vector">
@@ -14,8 +34,8 @@
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblEntry">
 		<map-to xml="entry"/>
-		<field name="accession" type="string">
-			<bind-xml location="accession" node="attribute"/>
+		<field name="accession" type="string">
+			<bind-xml location="accession" node="attribute"/>
 		</field>
 		<field name="lastUpdated" type="string">
 			<bind-xml location="last-updated" node="attribute"/>
@@ -30,23 +50,23 @@
 		<field name="rLastUpdated" type="string">
 			<bind-xml location="releaseLastUpdated" node="attribute"/>
 		</field>
-		<field name="desc" type="string">
-			<bind-xml name="description" node="element"/>
+		<field name="desc" type="string">
+			<bind-xml name="description" node="element"/>
 		</field>
 		<field name="Keywords" type="string" collection="vector">
 			<bind-xml name="keyword" node="element"/>
 		</field>
-		<field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
-			<bind-xml location="sequence" node="element"/>
-		</field>
 		<field name="features" type="jalview.datamodel.xdb.embl.EmblFeature" collection="vector">
-			<bind-xml name="feature"/>
+			<bind-xml name="feature"/>
 		</field>
 		<field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
 			<bind-xml name="dbreference" />
 		</field>
+		<field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
+			<bind-xml name="sequence"/> <!-- location="sequence" node="element"/ -->
+		</field>
 	</class>
-	<class name="jalview.datamodel.xdb.embl.EmblSequence">
+	<class name="jalview.datamodel.xdb.embl.EmblSequence">
 		<map-to xml="sequence"/>
 		<field name="type" type="string">
 			<bind-xml name="type" node="attribute" location="type"/>
@@ -56,15 +76,15 @@
 		</field>
 		<field name="sequence" type="string">
 			<bind-xml node="text"/>
-		</field>
+		</field>
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblFeature" verify-constructable="false">
 		<map-to xml="feature"/>
-		<field name="name" type="string">
-			<bind-xml name="name" node="attribute"/>
+		<field name="name" type="string">
+			<bind-xml name="name" node="attribute"/>
 		</field>
-		<field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
-			<bind-xml name="dbreference" node="element"/>
+		<field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
+			<bind-xml name="dbreference" node="element"/>
 		</field>
 		<field name="qualifiers" type="jalview.datamodel.xdb.embl.Qualifier" collection="vector">
 			<bind-xml name="qualifier"/>
@@ -84,13 +104,16 @@
 			<bind-xml name="secondary" node="attribute"/>
 		</field>
 	</class>
-	<class  name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
+	<class  name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
 		<map-to xml="Qualifier"/>
 		<field name="name">
 			<bind-xml name="name" node="attribute"/>
 		</field>
-		<field name="value">
-			<bind-xml node="text"/>
+		<field name="evidence" type="string" collection="array">
+			<bind-xml name="evidence" node="element"/>
+		</field>
+		<field name="values" type="string" collection="array">
+			<bind-xml name="value" node="element"/>
 		</field>
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblFeatureLocations">
@@ -123,12 +146,12 @@
 			<bind-xml name="basePosition" node="element"/>
 		</field>
 	</class>
-	<class name="jalview.datamodel.xdb.embl.BasePosition">
+	<class name="jalview.datamodel.xdb.embl.BasePosition">
 		<map-to xml="basePosition"/>
-		<field name="type">
-			<bind-xml name="type" node="attribute"/>
+		<field name="type">
+			<bind-xml name="type" node="attribute"/>
 		</field>
-		<field name="pos">
+		<field name="pos">
 			<bind-xml node="text"/>
 		</field>
 	</class>