X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Fembl_mapping.xml;h=c203c718167c5eeea1e110166788bf2899f1519a;hb=ddb0a809c051b4e2506aafe9efacbd57868742db;hp=7238e89b7c058c92c434b8ea5ddfc437ba70e90a;hpb=0879ca19b6df4983f82521a479b848526b2d14d4;p=jalview.git

diff --git a/resources/embl_mapping.xml b/resources/embl_mapping.xml
index 7238e89..c203c71 100644
--- a/resources/embl_mapping.xml
+++ b/resources/embl_mapping.xml
@@ -1,7 +1,28 @@
 <?xml version="1.0"?>
+<!--
+   * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
+   * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+   * 
+   * This program is free software; you can redistribute it and/or
+   * modify it under the terms of the GNU General Public License
+   * as published by the Free Software Foundation; either version 2
+   * of the License, or (at your option) any later version.
+   * 
+   * This program is distributed in the hope that it will be useful,
+   * but WITHOUT ANY WARRANTY; without even the implied warranty of
+   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+   * GNU General Public License for more details.
+   * 
+   * You should have received a copy of the GNU General Public License
+   * along with this program; if not, write to the Free Software
+   * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+-->
 <mapping xmlns="http://castor.exolab.org/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://castor.exolab.org/ castor-mapping.xsd">
-	<!-- -->
+	xsi:schemaLocation="http://castor.exolab.org/ ../schemas/castor-mapping.xsd">
+<!--
+	History: Originally created from EMBL_common_V1.0
+	Updated on 24th April 2007 for WsDBFetch Service move to EMBL_Services_V1.1.xsd
+	-->
 	<class name="jalview.datamodel.xdb.embl.EmblFile">
 		<map-to xml="EMBL_Services"/>
 		<field name="entries" type="jalview.datamodel.xdb.embl.EmblEntry" collection="vector">
@@ -14,8 +35,8 @@
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblEntry">
 		<map-to xml="entry"/>
-		<field name="accession" type="string">
-			<bind-xml location="accession" node="attribute"/>
+		<field name="accession" type="string">
+			<bind-xml location="accession" node="attribute"/>
 		</field>
 		<field name="lastUpdated" type="string">
 			<bind-xml location="last-updated" node="attribute"/>
@@ -30,23 +51,23 @@
 		<field name="rLastUpdated" type="string">
 			<bind-xml location="releaseLastUpdated" node="attribute"/>
 		</field>
-		<field name="desc" type="string">
-			<bind-xml name="description" node="element"/>
+		<field name="desc" type="string">
+			<bind-xml name="description" node="element"/>
 		</field>
 		<field name="Keywords" type="string" collection="vector">
 			<bind-xml name="keyword" node="element"/>
 		</field>
-		<field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
-			<bind-xml location="sequence" node="element"/>
-		</field>
 		<field name="features" type="jalview.datamodel.xdb.embl.EmblFeature" collection="vector">
-			<bind-xml name="feature"/>
+			<bind-xml name="feature"/>
 		</field>
 		<field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
 			<bind-xml name="dbreference" />
 		</field>
+		<field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
+			<bind-xml name="sequence"/> <!-- location="sequence" node="element"/ -->
+		</field>
 	</class>
-	<class name="jalview.datamodel.xdb.embl.EmblSequence">
+	<class name="jalview.datamodel.xdb.embl.EmblSequence">
 		<map-to xml="sequence"/>
 		<field name="type" type="string">
 			<bind-xml name="type" node="attribute" location="type"/>
@@ -56,15 +77,15 @@
 		</field>
 		<field name="sequence" type="string">
 			<bind-xml node="text"/>
-		</field>
+		</field>
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblFeature" verify-constructable="false">
 		<map-to xml="feature"/>
-		<field name="name" type="string">
-			<bind-xml name="name" node="attribute"/>
+		<field name="name" type="string">
+			<bind-xml name="name" node="attribute"/>
 		</field>
-		<field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
-			<bind-xml name="dbreference" node="element"/>
+		<field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
+			<bind-xml name="dbreference" node="element"/>
 		</field>
 		<field name="qualifiers" type="jalview.datamodel.xdb.embl.Qualifier" collection="vector">
 			<bind-xml name="qualifier"/>
@@ -84,13 +105,16 @@
 			<bind-xml name="secondary" node="attribute"/>
 		</field>
 	</class>
-	<class  name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
+	<class  name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
 		<map-to xml="Qualifier"/>
 		<field name="name">
 			<bind-xml name="name" node="attribute"/>
 		</field>
-		<field name="value">
-			<bind-xml node="text"/>
+		<field name="evidence" type="string" collection="array">
+			<bind-xml name="evidence" node="element"/>
+		</field>
+		<field name="values" type="string" collection="array">
+			<bind-xml name="value" node="element"/>
 		</field>
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblFeatureLocations">
@@ -123,12 +147,12 @@
 			<bind-xml name="basePosition" node="element"/>
 		</field>
 	</class>
-	<class name="jalview.datamodel.xdb.embl.BasePosition">
+	<class name="jalview.datamodel.xdb.embl.BasePosition">
 		<map-to xml="basePosition"/>
-		<field name="type">
-			<bind-xml name="type" node="attribute"/>
+		<field name="type">
+			<bind-xml name="type" node="attribute"/>
 		</field>
-		<field name="pos">
+		<field name="pos">
 			<bind-xml node="text"/>
 		</field>
 	</class>