X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Fembl_mapping.xml;h=ccbde5e1558052e2217ef74782e305f52d6207ce;hb=refs%2Fheads%2Fj2s%2Fdevelop;hp=92e483c82129626f6229e4e47b25f64edf7db7fc;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git

diff --git a/resources/embl_mapping.xml b/resources/embl_mapping.xml
index 92e483c..ccbde5e 100644
--- a/resources/embl_mapping.xml
+++ b/resources/embl_mapping.xml
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -34,17 +34,16 @@
 		</field>
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblEntry">
-		<map-to xml="entry"/>
 		<field name="accession" type="string">
 			<bind-xml location="accession" node="attribute"/>
 		</field>
+		<!--  May 2015 changed from last-updated to match xml -->
 		<field name="lastUpdated" type="string">
-			<bind-xml location="last-updated" node="attribute"/>
+			<bind-xml location="lastUpdated" node="attribute"/>
 		</field>
 		<field name="version" type="string">
 			<bind-xml location="version" node="attribute"/>
 		</field>
-		
 		<field name="rCreated" type="string">
 			<bind-xml location="releaseCreated" node="attribute"/>
 		</field>
@@ -54,7 +53,7 @@
 		<field name="desc" type="string">
 			<bind-xml name="description" node="element"/>
 		</field>
-		<field name="Keywords" type="string" collection="vector">
+		<field name="keywords" type="string" collection="vector">
 			<bind-xml name="keyword" node="element"/>
 		</field>
 		<field name="features" type="jalview.datamodel.xdb.embl.EmblFeature" collection="vector">
@@ -64,11 +63,10 @@
 			<bind-xml name="dbreference" />
 		</field>
 		<field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
-			<bind-xml name="sequence"/> <!-- location="sequence" node="element"/ -->
+			<bind-xml name="sequence"/>
 		</field>
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblSequence">
-		<map-to xml="sequence"/>
 		<field name="type" type="string">
 			<bind-xml name="type" node="attribute" location="type"/>
 		</field>
@@ -80,7 +78,6 @@
 		</field>
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblFeature" verify-constructable="false">
-		<map-to xml="feature"/>
 		<field name="name" type="string">
 			<bind-xml name="name" node="attribute"/>
 		</field>
@@ -95,18 +92,17 @@
 		</field>
 	</class>
 	<class name="jalview.datamodel.DBRefEntry" verify-constructable="false">
-		<field name="accessionId" type="java.lang.String"><!-- set-method="setAccessionId" get-method="getAccessionId"> -->
+		<field name="accessionId" type="java.lang.String">
 			<bind-xml name="primary" node="attribute"/>
 		</field>
-		<field name="source" type="java.lang.String"> <!--set-method="setSource" get-method="getSource"> -->
+		<field name="source" type="java.lang.String"> 
 			<bind-xml name="db" node="attribute"/>
 		</field>
-		<field name="version" type="string"><!-- set-method="setVersion" get-method="getVersion"> -->
+		<field name="version" type="string">
 			<bind-xml name="secondary" node="attribute"/>
 		</field>
 	</class>
 	<class  name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
-		<map-to xml="Qualifier"/>
 		<field name="name">
 			<bind-xml name="name" node="attribute"/>
 		</field>
@@ -118,7 +114,6 @@
 		</field>
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblFeatureLocations">
-		<map-to xml="location"/>
 		<field name="locationType" type="string">
 			<bind-xml name="type" node="attribute"/>
 		</field>
@@ -130,7 +125,6 @@
 		</field>
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblFeatureLocElement">
-		<map-to xml="locationElement"/>
 		<field name="type" type="string">
 			<bind-xml name="type" node="attribute"/>
 		</field>
@@ -148,7 +142,6 @@
 		</field>
 	</class>
 	<class name="jalview.datamodel.xdb.embl.BasePosition">
-		<map-to xml="basePosition"/>
 		<field name="type">
 			<bind-xml name="type" node="attribute"/>
 		</field>