X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Fembl_mapping.xml;h=f3613191349d2a7ae26096704871082f038f0a1d;hb=27652ebdfcd5b1fe5f08c87a8a261165b9ce8aa4;hp=84ed647d460e3e9aa982f30c6c06c4ff9ff23574;hpb=586c640e0c55327a34d72c3cab6eb8052abc3029;p=jalview.git

diff --git a/resources/embl_mapping.xml b/resources/embl_mapping.xml
index 84ed647..f361319 100644
--- a/resources/embl_mapping.xml
+++ b/resources/embl_mapping.xml
@@ -1,11 +1,29 @@
 <?xml version="1.0"?>
 <!--
+  Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.0.b2)
+  Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+  
+  This program is free software; you can redistribute it and/or
+  modify it under the terms of the GNU General Public License
+  as published by the Free Software Foundation; either version 2
+  of the License, or (at your option) any later version.
+  
+  This program is distributed in the hope that it will be useful,
+  but WITHOUT ANY WARRANTY; without even the implied warranty of
+  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+  GNU General Public License for more details.
+  
+  You should have received a copy of the GNU General Public License
+  along with this program; if not, write to the Free Software
+  Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+-->
+<!--
 	History: Originally created from EMBL_common_V1.0
 	Updated on 24th April 2007 for WsDBFetch Service move to EMBL_Services_V1.1.xsd
-	-->
+	-->
 	
 <mapping xmlns="http://castor.exolab.org/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://castor.exolab.org/ castor-mapping.xsd">
+	xsi:schemaLocation="http://castor.exolab.org/ ../schemas/castor-mapping.xsd">
 	<!-- -->
 	<class name="jalview.datamodel.xdb.embl.EmblFile">
 		<map-to xml="EMBL_Services"/>
@@ -19,8 +37,8 @@
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblEntry">
 		<map-to xml="entry"/>
-		<field name="accession" type="string">
-			<bind-xml location="accession" node="attribute"/>
+		<field name="accession" type="string">
+			<bind-xml location="accession" node="attribute"/>
 		</field>
 		<field name="lastUpdated" type="string">
 			<bind-xml location="last-updated" node="attribute"/>
@@ -35,23 +53,23 @@
 		<field name="rLastUpdated" type="string">
 			<bind-xml location="releaseLastUpdated" node="attribute"/>
 		</field>
-		<field name="desc" type="string">
-			<bind-xml name="description" node="element"/>
+		<field name="desc" type="string">
+			<bind-xml name="description" node="element"/>
 		</field>
 		<field name="Keywords" type="string" collection="vector">
 			<bind-xml name="keyword" node="element"/>
 		</field>
-		<field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
-			<bind-xml location="sequence" node="element"/>
-		</field>
 		<field name="features" type="jalview.datamodel.xdb.embl.EmblFeature" collection="vector">
-			<bind-xml name="feature"/>
+			<bind-xml name="feature"/>
 		</field>
 		<field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
 			<bind-xml name="dbreference" />
 		</field>
+		<field name="sequence" type="jalview.datamodel.xdb.embl.EmblSequence">
+			<bind-xml name="sequence"/> <!-- location="sequence" node="element"/ -->
+		</field>
 	</class>
-	<class name="jalview.datamodel.xdb.embl.EmblSequence">
+	<class name="jalview.datamodel.xdb.embl.EmblSequence">
 		<map-to xml="sequence"/>
 		<field name="type" type="string">
 			<bind-xml name="type" node="attribute" location="type"/>
@@ -61,15 +79,15 @@
 		</field>
 		<field name="sequence" type="string">
 			<bind-xml node="text"/>
-		</field>
+		</field>
 	</class>
 	<class name="jalview.datamodel.xdb.embl.EmblFeature" verify-constructable="false">
 		<map-to xml="feature"/>
-		<field name="name" type="string">
-			<bind-xml name="name" node="attribute"/>
+		<field name="name" type="string">
+			<bind-xml name="name" node="attribute"/>
 		</field>
-		<field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
-			<bind-xml name="dbreference" node="element"/>
+		<field name="dbRefs" type="jalview.datamodel.DBRefEntry" collection="vector">
+			<bind-xml name="dbreference" node="element"/>
 		</field>
 		<field name="qualifiers" type="jalview.datamodel.xdb.embl.Qualifier" collection="vector">
 			<bind-xml name="qualifier"/>
@@ -89,7 +107,7 @@
 			<bind-xml name="secondary" node="attribute"/>
 		</field>
 	</class>
-	<class  name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
+	<class  name="jalview.datamodel.xdb.embl.Qualifier" verify-constructable="false">
 		<map-to xml="Qualifier"/>
 		<field name="name">
 			<bind-xml name="name" node="attribute"/>
@@ -131,12 +149,12 @@
 			<bind-xml name="basePosition" node="element"/>
 		</field>
 	</class>
-	<class name="jalview.datamodel.xdb.embl.BasePosition">
+	<class name="jalview.datamodel.xdb.embl.BasePosition">
 		<map-to xml="basePosition"/>
-		<field name="type">
-			<bind-xml name="type" node="attribute"/>
+		<field name="type">
+			<bind-xml name="type" node="attribute"/>
 		</field>
-		<field name="pos">
+		<field name="pos">
 			<bind-xml node="text"/>
 		</field>
 	</class>