X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Ffts%2Funiprot_data_columns.txt;h=f50664881d9cc8f105341fe62cd35468c1a48ecf;hb=e691bab6155dcc19e5d6ed552ba97138cd0c7b50;hp=40e28e4f384c69342b29d2fb620b6297e086a591;hpb=a425013582780002a90b7b5acf2ee063b847784d;p=jalview.git

diff --git a/resources/fts/uniprot_data_columns.txt b/resources/fts/uniprot_data_columns.txt
index 40e28e4..f506648 100644
--- a/resources/fts/uniprot_data_columns.txt
+++ b/resources/fts/uniprot_data_columns.txt
@@ -1,3 +1,24 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+
 uniprot_data_columns
 #
 _group.id
@@ -8,7 +29,7 @@ g2;Cross References;2
 g3;Names & Taxonomy;1
 g4;Procedures & Softwares;4
 g5;Date Of;5
-g6;Miscellenous;6
+g6;Miscellaneous;6
 g7;Sequences;7
 g8;Function;8
 g9;Interaction;9
@@ -22,11 +43,11 @@ g16;Publications;16
 g17;Date of;17
 g18;Family & Domain;18
 #
-_data_column.primary_key;entry name
-_data_column.default_response_page_size;100
+_data_column.primary_key;id
+_data_column.default_response_page_size;500
 #
 _data_column.name
-_data_column.code
+_data_column.code|_data_column.alt_code (optional: used for specifying search code when different from original code)
 _data_column.group_id
 _data_column.data_type
 _data_column.min_col_width
@@ -34,16 +55,17 @@ _data_column.max_col_width
 _data_column.preferred_col_width
 _data_column.is_shown_by_default
 _data_column.is_searchable
-Entry Name;entry name;String;g3;90;150;95;true;true
-Protein names;protein names;String;g3;300;1500;500;true;true
-Gene Names;genes;String;g3;50;1000;95;true;true
-Organism;organism;String;g3;50;1000;95;true;true
-Organism ID;organism-id;int;g3;60;100;80;false;true
-Proteomes;proteome;String;g3;50;1000;95;false;true
-Taxonomic lineage (ALL);lineage(ALL);String;g3;50;400;95;false;false
-Virus hosts;virus hosts;String;g3;50;1000;95;false;true
-Fragment;fragment;String;g7;50;1000;95;false;true
-Gene encoded by;encodedon;String;g7;50;1000;95;false;true
+Uniprot Id;id;String;g3;80;150;85;true;true
+Entry Name;entry name|mnemonic;String;g3;100;150;105;true;true
+Protein names;protein names|name;String;g3;300;1500;500;true;true
+Gene Names;genes|gene;String;g3;100;1000;145;true;true
+Organism;organism;String;g3;100;1000;200;true;true
+Organism ID;organism-id;int;g3;60;100;80;false;false
+Proteomes;proteome;String;g3;50;1000;95;false;false
+Taxonomic lineage (ALL);lineage(ALL)|taxonomy;String;g3;50;400;95;false;false
+Virus hosts;virus hosts|host;String;g3;50;1000;95;false;true
+Fragment;fragment;String;g7;50;1000;95;false;false
+Gene encoded by;encodedon;String;g7;50;1000;95;false;false
 Alternative products (isoforms);comment(ALTERNATIVE PRODUCTS);String;g7;50;1000;95;false;false
 Erroneous gene model prediction;comment(ERRONEOUS GENE MODEL PREDICTION);String;g7;50;1000;95;false;false
 Erroneous initiation;comment(ERRONEOUS INITIATION);String;g7;50;1000;95;false;false
@@ -53,9 +75,10 @@ Mass spectrometry;comment(MASS SPECTROMETRY);String;g7;50;1000;95;false;false
 Polymorphism;comment(POLYMORPHISM);String;g7;50;1000;95;false;false
 RNA editing;comment(RNA EDITING);String;g7;50;1000;95;false;false
 Sequence caution;comment(SEQUENCE CAUTION);String;g7;50;1000;95;false;false
-Length;length;int;g7;50;100;95;false;true
-Mass;mass;String;g7;50;100;80;false;true
-Sequence;sequence;String;g7;50;1000;95;false;true
+Status;reviewed;String;g6;50;100;95;true;true
+Length;length;int|T|0;g7;50;100;65;true;true
+Mass;mass;int|T|0;g7;50;100;80;false;true
+Sequence;sequence;String;g7;50;1000;95;false;false
 Alternative sequence;feature(ALTERNATIVE SEQUENCE);String;g7;50;1000;95;false;false
 Natural variant;feature(NATURAL VARIANT);String;g7;50;1000;95;false;false
 Non-adjacent residues;feature(NON ADJACENT RESIDUES);String;g7;50;1000;95;false;false
@@ -81,16 +104,15 @@ DNA binding;feature(DNA BINDING);String;g8;50;1000;95;false;false
 Metal binding;feature(METAL BINDING);String;g8;50;1000;95;false;false
 Nucleotide binding;feature(NP BIND);String;g8;50;1000;95;false;false
 Site;feature(SITE);String;g8;50;1000;95;false;false
-Annotation;annotation score;String;g6;50;1000;95;false;true
-Features;features;String;g6;50;1000;95;false;true
+Annotation;annotation score;String;g6;50;1000;95;false;false
+Features;features;String;g6;50;1000;95;false;false
 Caution;comment(CAUTION);String;g6;50;1000;95;false;false
 Miscellaneous [CC];comment(GENERAL);String;g6;50;1000;95;false;false
-Keywords;keywords;String;g6;50;1000;95;false;true
+Keywords;keywords|keyword;String;g6;50;1000;95;false;true
 Protein existence;existence;String;g6;50;1000;95;false;true
-Status;reviewed;String;g6;50;1000;95;false;true
-ALL;name;String;g7;50;1000;95;false;true;
+ALL;Search All;String;g7;50;1000;95;false;true
 Subunit structure [CC];comment(SUBUNIT);String;g9;50;1000;95;false;false
-Interacts with;interactor;String;g9;50;1000;95;false;true
+Interacts with;interactor;String;g9;50;1000;95;false;false
 Developmental stage;comment(DEVELOPMENTAL STAGE);String;g10;50;1000;95;false;false
 Induction;comment(INDUCTION);String;g10;50;1000;95;false;false
 Tissue specificity;comment(TISSUE SPECIFICITY);String;g10;50;1000;95;false;false
@@ -126,13 +148,13 @@ Beta strand;feature(BETA STRAND);String;g15;50;1000;95;false;false
 Helix;feature(HELIX);String;g15;50;1000;95;false;false
 Turn;feature(TURN);String;g15;50;1000;95;false;false
 PubMed ID;citation;String;g16;50;1000;95;false;true
-Date of creation;created;String;g17;80;150;100;true;true
-Date of last modification;last-modified;String;g17;80;150;100;true;true
+Date of creation;created;String;g17;80;150;100;false;true
+Date of last modification;last-modified;String;g17;80;150;100;false;true
 Date of last sequence modification;sequence-modified;String;g17;80;150;100;false;true
 Version (entry);version(entry);int;g17;80;100;80;false;false
-Domain [CC];comment(DOMAIN);String;g18;80;1000;95;false;false
+Domain [cc];comment(DOMAIN)|domain;String;g18;80;1000;95;false;true
 Sequence similarities;comment(SIMILARITY);String;g18;50;1000;95;false;false
-Protein families;families;String;g18;50;1000;95;false;true
+Protein families;families|family;String;g18;50;1000;95;false;true
 Coiled coil;feature(COILED COIL);String;g18;50;1000;95;false;false
 Compositional bias;feature(COMPOSITIONAL BIAS);String;g18;50;1000;95;false;false
 Domain [FT];feature(DOMAIN EXTENT);String;g18;50;1000;95;false;false