X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=0c4f1653d9b4c0bde92b5a9902af67f9cac06a35;hb=0393ac2e7941f0afaae4d4947f400291b7abd82c;hp=92a6ab8cc14ee6bcee009bdd649f0d085fd4d6f2;hpb=9018c06add8548b4921a4c21f21a1b85a0bea1de;p=jalview.git diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index 92a6ab8..0c4f165 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -32,7 +32,20 @@ action.load_project = Load Project action.save_project = Save Project action.save_project_as = Save Project as... action.quit = Quit -label.quit_jalview = Quit Jalview? +action.force_quit = Force quit +label.quit_jalview = Are you sure you want to quit Jalview? +label.wait_for_save = Wait for save +label.unsaved_changes = There are unsaved changes. +label.unsaved_alignments = There are unsaved alignments. +label.save_in_progress = Some files are still saving: +label.confirm_quit_viewer = An external viewer is still open. Close the external window as well? +label.confirm_quit_viewers = External viewers are still open. Close these external windows as well? +label.unknown = Unknown +label.quit_after_saving = Jalview will quit after saving. +label.all_saved = All files saved. +label.quitting_bye = Quitting, bye! +action.wait = Wait +action.cancel_quit = Cancel quit action.expand_views = Expand Views action.gather_views = Gather Views action.page_setup = Page Setup... @@ -118,6 +131,7 @@ action.paste_annotations = Paste Annotations action.format = Format action.select = Select action.new_view = New View +action.new_structure_view_with = Open new structure view with {0} action.close = Close action.add = Add action.save_as = Save as... @@ -129,6 +143,8 @@ action.calculate = Calculate action.select_all = Select all action.select_highlighted_columns = Select Highlighted Columns tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns +action.copy_highlighted_regions = Copy Highlighted Regions +tooltip.copy_highlighted_regions = Copies highlighted sequence regions to the clipboard for export or further analysis action.deselect_all = Deselect all action.invert_selection = Invert selection action.using_jmol = Using Jmol @@ -188,7 +204,7 @@ label.occupancy = Occupancy # delete Clustal - use FileFormat name instead label.clustal = Clustal # label.colourScheme_ as in JalviewColourScheme, spaces removed -label.colourScheme_clustal = Clustalx +label.colourScheme_clustal = Clustal label.colourScheme_blosum62 = BLOSUM62 Score label.colourScheme_%identity = Percentage Identity label.colourScheme_zappo = Zappo @@ -200,9 +216,14 @@ label.colourScheme_turnpropensity = Turn Propensity label.colourScheme_buriedindex = Buried Index label.colourScheme_purine/pyrimidine = Purine/Pyrimidine label.colourScheme_nucleotide = Nucleotide +label.colourScheme_nucleotideambiguity = Nucleotide Ambiguity label.colourScheme_t-coffeescores = T-Coffee Scores label.colourScheme_rnahelices = By RNA Helices label.colourScheme_sequenceid = Sequence ID Colour +label.colourScheme_gecos-flower = gecos Flower +label.colourScheme_gecos-blossom = gecos Blossom +label.colourScheme_gecos-sunset = gecos Sunset +label.colourScheme_gecos-ocean = gecos Ocean label.blc = BLC label.fasta = Fasta label.msf = MSF @@ -272,7 +293,7 @@ label.viewer_path = Path to {0} program label.viewer_path_tip = Jalview will first try any path entered here, else standard installation locations.
Double-click to browse for file. label.invalid_viewer_path = Path not found or not executable label.viewer_missing = Structure viewer not found.
Please enter the path to the executable (if installed),
or download and install the program. -label.open_viewer_failed = Error opening {0} - is it installed?\nCheck path in Preferences, Structure +label.open_viewer_failed = Error opening {0} - is it installed?\nCheck configured path in Structure tab of Jalview''s Preferences label.min_colour = Minimum Colour label.max_colour = Maximum Colour label.no_colour = No Colour @@ -342,6 +363,7 @@ label.sequences_from = Sequences from {0} label.successfully_loaded_file = Successfully loaded file {0} label.successfully_loaded_matrix = Successfully loaded score matrix {0} label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format. +label.successfully_printed_to_stdout_in_format = Successfully printed to STDOUT in {0} format. label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard. label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment. label.problem_reading_tcoffee_score_file = Problem reading T-COFFEE score file @@ -402,7 +424,7 @@ label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be label.couldnt_load_file = Couldn't load file label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure. label.no_pdb_id_in_file = No PDB Id in File -label.couldnt_read_pasted_text = Couldn't read the pasted text {0} +label.couldnt_read_pasted_text = Couldn''t read the pasted text {0} label.error_parsing_text = Error parsing text label.input_alignment_from_url = Input Alignment From URL label.input_alignment = Input Alignment @@ -428,6 +450,7 @@ label.input_cut_paste_params = Cut & Paste Input - {0} label.alignment_output_command = Alignment output - {0} label.annotations = Annotations label.structure_options = Structure Options +label.structure_import_options = Structure Import Options label.features = Features label.overview_params = Overview {0} label.paste_newick_file = Paste Newick file @@ -496,6 +519,7 @@ label.delete_gaps = Delete {0} gaps label.sequence_details = Sequence Details label.viewer_help = {0} Help label.close_viewer = Close Viewer +label.close_viewers = Close Viewers label.confirm_close_viewer = This will close Jalview''s connection to {0}.
Do you want to close the {1} window as well? label.all = All label.sort_by = Sort alignment by @@ -513,7 +537,11 @@ label.retrieve_parse_sequence_database_records_alignment_or_selected_sequences = label.standard_databases = Standard Databases label.fetch_embl_uniprot = Fetch from EMBL/EMBLCDS or Uniprot/PDB and any selected DAS sources label.fetch_uniprot_references = Fetch Uniprot references +label.search_3dbeacons = Search 3D-Beacons +label.find_models_from_3dbeacons = Search 3D-Beacons for 3D structures and models +label.3dbeacons = 3D-Beacons label.fetch_references_for = Fetch database references for {0} sequences ? +label.fetch_references_for_3dbeacons = 3D Beacons needs to fetch Uniprot References for {0} sequences. Do you want to continue ? label.reset_min_max_colours_to_defaults = Reset min and max colours to defaults from user preferences. label.align_structures_using_linked_alignment_views = Superpose structures using {0} selected alignment view(s) label.threshold_feature_display_by_score = Threshold the feature display by score. @@ -527,6 +555,7 @@ label.select_colour_maximum_value = Select Colour for Maximum Value label.open_url_param = Open URL {0} label.open_url_seqs_param = Open URL ({0}..) ({1} seqs) label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0} +label.load_pae_matrix_file_associate_with_structure = Load a PAE matrix file and associate it with structure {0} label.reveal_hidden_columns = Reveal Hidden Columns with Right Mouse Button label.dark_colour = Dark Colour label.light_colour = Light Colour @@ -582,7 +611,7 @@ label.nuc_alignment_colour = Nucleotide Alignment Colour label.address = Address label.host = Host label.port = Port -label.default_browser_unix = Default Browser (Unix) +label.default_browser_unix_windows = Default Browser (Unix, Windows) label.send_usage_statistics = Send usage statistics label.check_for_questionnaires = Check for questionnaires label.check_for_latest_version = Check for latest version @@ -620,8 +649,8 @@ label.editing = Editing label.web_services = Web Services label.right_click_to_edit_currently_selected_parameter = Right click to edit currently selected parameter. label.let_jmol_manage_structure_colours = Let Jmol manage structure colours -label.fetch_chimera_attributes = Fetch Chimera attributes -label.fetch_chimera_attributes_tip = Copy Chimera attribute to Jalview feature +label.fetch_viewer_attributes = Fetch {0} attributes +label.fetch_viewer_attributes_tip = Copy {0} attribute to Jalview feature label.marks_leaves_tree_not_associated_with_sequence = Marks leaves of tree not associated with a sequence label.index_web_services_menu_by_host_site = Index web services in menu by the host site label.option_want_informed_web_service_URL_cannot_be_accessed_jalview_when_starts_up = Check this option if you want to be informed
when a web service URL cannot be accessed by Jalview
when it starts up @@ -675,12 +704,13 @@ label.sequence_details_for = Sequence Details for {0} label.sequence_name = Sequence Name label.sequence_description = Sequence Description label.edit_sequence_name_description = Edit Sequence Name/Description -label.spaces_converted_to_underscores = Spaces have been converted to _ +label.spaces_converted_to_underscores = Spaces have been converted to underscores (_) label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name label.select_outline_colour = Select Outline Colour label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences." label.web_browser_not_found = Web browser not found label.select_pdb_file_for = Select a PDB file for {0} +label.select_pae_matrix_file_for = Select a PAE matrix file for {0} label.html = HTML label.wrap = Wrap label.show_database_refs = Show Database Refs @@ -713,7 +743,7 @@ error.superposition_failed = Superposition failed: {0} label.insufficient_residues = Not enough aligned residues ({0}) to perform superposition label.create_viewer_attributes = Write Jalview features label.create_viewer_attributes_tip = Set structure residue attributes for Jalview features -label.attributes_set = {0} attribute values set on Chimera +label.attributes_set = {0} attribute values set on {1} label.sort_alignment_by_tree = Sort Alignment By Tree label.mark_unlinked_leaves = Mark Unlinked Leaves label.associate_leaves_with = Associate Leaves With @@ -773,8 +803,10 @@ label.transformed_points_for_params = Transformed points for {0} label.variable_color_for = Variable Feature Colour for {0} label.select_background_colour = Select Background Colour label.invalid_font = Invalid Font +label.search_db_all = Search all of {0} +label.search_db_index = Search {0} index {1} label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";" -label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";" +label.separate_multiple_query_values = Enter one or more {0} separated by a semi-colon ";" label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This searches the entire database) label.replace_commas_semicolons = Replace commas with semi-colons label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0} @@ -850,7 +882,7 @@ label.invalid_name = Invalid name label.set_proxy_settings = Please set up your proxy settings in the 'Connections' tab of the Preferences window label.proxy_authorization_failed = Proxy Authorization Failed label.internal_jalview_error = Internal Jalview Error -label.secondary_structure_prediction_service_couldnt_be_located = The Secondary Structure Prediction Service named {0} at {1} couldn't be located. +label.secondary_structure_prediction_service_couldnt_be_located = The Secondary Structure Prediction Service named {0} at {1} couldn''t be located. label.service_called_is_not_msa_service = The Service called \n{0}\nis not a \nMultiple Sequence Alignment Service\! label.msa_service_is_unknown = The Multiple Sequence Alignment Service named {0} is unknown label.service_called_is_not_seq_search_service = The Service called \n{0}\nis not a \nSequence Search Service\! @@ -964,7 +996,7 @@ error.cannot_set_arguments_to_jabaws_param_set = Cannot set arguments to a JabaW error.implementation_error_runner_config_not_available = Implementation Error: Runner Config not available for a JABAWS service of type {0} ({1}) error.implementation_error_cannot_handle_jaba_param = Implementation Error: Cannot handle Jaba parameter object {0} error.implementation_error_attempt_to_delete_service_preset = Implementation error: Attempt to delete a service preset! -error.implementation_error_cannot_locate_oldname_presetname = Implementation error: Can't locate either oldname ({0}) or presetName ({1}in the datastore!" +error.implementation_error_cannot_locate_oldname_presetname = Implementation error: Can''t locate either oldname ({0}) or presetName ({1}) in the datastore!" error.implementation_error_jabaws_param_set_only_handled_by = Implementation error: JabaWsParamSets can only be handled by JabaParamStore error.cannot_set_source_file_for = Cannot set source file for {0} error.mismatch_service_instance_preset = Probable mismatch between service instance and preset! @@ -972,7 +1004,7 @@ error.cannot_set_params_for_ws_preset = Cannot set Parameters for a Jaba Web ser error.implementation_error_can_only_instantiate_jaba_param_sets = Implementation error: Can only instantiate Jaba parameter sets error.no_aacon_service_found = No AACon service found error.implementation_error_couldnt_copy_value_constraint = Implementation error: could not copy ValueConstrain! -error.couldnt_encode_as_utf8 = Couldn't encode {0} as UTF-8. +error.couldnt_encode_as_utf8 = Couldn''t encode {0} as UTF-8. error.tree_inputtype_not_yet_implemented = Tree InputType not yet implemented error.implementation_error_need_to_have_httpresponse = Implementation Error: need to have an HttpResponse to process error.dbrefsource_implementation_exception =DBRefSource Implementation Exception @@ -1029,21 +1061,23 @@ error.implementation_error_reset_called_for_invalid_source = Implementation Erro exception.number_of_residues_in_query_sequence_differ_from_prediction = Number of residues in {0} supposed query sequence ({1}\n{2})\ndiffer from number of prediction sites in prediction ({3}) label.mapped = mapped exception.jpredconcide_entry_has_unexpected_number_of_columns = JPredConcise: Entry ({0}) has an unexpected number of columns -exception.couldnt_parse_concise_annotation_for_prediction = Couldn't parse concise annotation for prediction profile.\n{0} +exception.couldnt_parse_concise_annotation_for_prediction = Couldn''t parse concise annotation for prediction profile.\n{0} exception.newfile = NewickFile\: {0}\n label.no_tree_read_in = No Tree read in -exception.rnaml_couldnt_access_datasource = Couldn't access datasource ({0}) -exception.ranml_couldnt_process_data = Couldn't process data as RNAML file ({0}) +exception.rnaml_couldnt_access_datasource = Couldn''t access datasource ({0}) +exception.ranml_couldnt_process_data = Couldn''t process data as RNAML file ({0}) exception.ranml_invalid_file = Invalid RNAML file ({0}) exception.ranml_problem_parsing_data = Problem parsing data as RNAML ({0}) exception.pfam_no_sequences_found = No sequences found (PFAM input) exception.stockholm_invalid_format = This file is not in valid STOCKHOLM format: First line does not contain '# STOCKHOLM' exception.couldnt_parse_sequence_line = Could not parse sequence line: {0} exception.unknown_annotation_detected = Unknown annotation detected: {0} {1} -exception.couldnt_store_sequence_mappings = Couldn't store sequence mappings for {0} +exception.couldnt_store_sequence_mappings = Couldn''t store sequence mappings for {0} exception.matrix_too_many_iteration = Too many iterations in {0} (max is {1}) exception.browser_not_found = Exception in finding browser: {0} +exception.browser_unable_to_launch = Unable to launch browser: {0} exception.browser_unable_to_locate = Unable to locate browser: {0} +exception.browser_os_not_supported = Launching browser on this operating system not supported. Use URL\n{0} exception.invocation_target_exception_creating_aedesc = InvocationTargetException while creating AEDesc: {0} exception.illegal_access_building_apple_evt= IllegalAccessException while building AppleEvent: {0} exception.unable_to_launch_url = Unable to launch URL: {0} @@ -1072,7 +1106,7 @@ warn.service_not_supported = Service not supported! warn.input_is_too_big = Input is too big! warn.invalid_job_param_set = Invalid job parameter set! warn.oneseq_msainput_selection = The current selection only contains a single sequence. Do you want to submit all sequences for alignment instead ? -info.job_couldnt_be_run_server_doesnt_support_program = Job could not be run because the server doesn't support this program.\n{0} +info.job_couldnt_be_run_server_doesnt_support_program = Job could not be run because the server doesn''t support this program.\n{0} info.job_couldnt_be_run_exceeded_hard_limit = Job could not be run because it exceeded a hard limit on the server.\n{0} info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service\!\n info.no_jobs_ran = No jobs ran @@ -1102,6 +1136,8 @@ status.collecting_job_results = Collecting job results. status.fetching_db_refs = Fetching db refs status.loading_cached_pdb_entries = Loading Cached PDB Entries status.searching_for_pdb_structures = Searching for PDB Structures +status.searching_3d_beacons = Searching 3D Beacons +status.no_structures_discovered_from_3d_beacons = No models discovered from 3D Beacons status.opening_file_for = opening file for status.colouring_structures = Colouring structures label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data @@ -1323,6 +1359,7 @@ label.backupfiles_confirm_save_file_backupfiles_roll_wrong = Something possibly label.backupfiles_confirm_save_new_saved_file_ok = The new saved file seems okay. label.backupfiles_confirm_save_new_saved_file_not_ok = The new saved file might not be okay. label.continue_operation = Continue operation? +label.continue = Continue label.backups = Backups label.backup = Backup label.backup_files = Backup Files @@ -1382,6 +1419,8 @@ label.click_to_edit = Click to edit, right-click for menu label.by_annotation_tooltip = Annotation Colour is configured from the main Colour menu label.show_linked_features = Show {0} features label.on_top = on top +label.include_features = Include Features +label.search_features = Search descriptions of displayed features label.include_linked_features = Include {0} features label.include_linked_tooltip = Include visible {0} features
converted to local sequence coordinates label.features_not_shown = {0} feature(s) not shown @@ -1390,5 +1429,38 @@ label.ignore_hidden = Ignore hidden columns label.ignore_hidden_tooltip = Ignore any characters in hidden columns when matching label.log_level = Log level label.log_level_tooltip = Temporarily set the log level for this console. The log level will revert to {0} when this Java console is closed. +label.copy = Copy label.copy_to_clipboard = Copy to clipboard label.copy_to_clipboard_tooltip = Copy all of the log text in this console to the system clipboard +label.startup = Startup +label.memory = Memory +label.customise_memory_settings = Customise maximum memory settings +label.memory_setting_text = New memory settings will only come into effect the next time you start Jalview +label.maximum_memory_used = Maximum memory limited to both +label.percent_of_physical_memory = Maximum percent of physical memory +label.maximum_memory = Maximum absolute memory +label.maximum_memory_tooltip = Enter memory as an integer number optionally followed by 'b', 'k', 'm', 'g' or 't' +label.adjustments_for_this_computer = Adjustments for this computer +label.memory_example_text = Maximum memory that would be used with these settings on this computer +label.memory_example_tooltip = The memory allocated to Jalview is the smaller of the percentage of physical memory (default 90%) and the maximum absolute memory (default 32GB). If your computer's memory cannot be ascertained then the maximum absolute memory defaults to 8GB (if not customised).
Jalview will always try and reserve 512MB for the OS and at least 512MB for itself. +warning.wrong_jvm_version_title = Wrong Java Version +warning.wrong_jvm_version_message = The Java version being used (Java {0}) may lead to problems.\nThis installation of Jalview should be used with Java {1}. +label.alphafold_reliability = Alphafold Reliability +label.tftype_default = Default +label.tftype_plddt = pLDDT +label.optional = (optional) +label.choose_tempfac_type = Choose Temperature Factor type +label.interpret_tempfac_as = Interpret Temperature Factor as +label.add_pae_matrix_file = Add PAE matrix file +label.nothing_selected = Nothing selected +prompt.analytics_title = Jalview Usage Statistics +prompt.analytics = Do you want to help make Jalview better by enabling the collection of usage statistics with Plausible analytics?\nYou can enable or disable usage tracking in the preferences. +label.working_ellipsis = Working ... +action.show_groups_on_matrix = Show groups on matrix +action.show_groups_on_matrix_tooltip = When enabled, clusters defined on the matrix's associated tree or below the assigned threshold are shown as different colours on the matrix annotation row +action.show_tree_for_matrix = Show tree for matrix +action.show_tree_for_matrix_tooltip = Opens a tree viewer to display the average distance tree for the matrix +action.cluster_matrix = Cluster matrix +action.clustering_matrix_for = Calculating tree for matrix {0} and clustering at {1} +action.cluster_matrix_tooltip = Computes an average distance tree for the matrix and displays it +label.all_known_alignment_files = All known alignment files