X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=195eb1f6d31f4111eb047e97dab009cb5a4e6cd8;hb=b254ce17e47c43d19804efa129367291a79b1315;hp=36572ed894771f7647625719930931e731be3f85;hpb=beb2fee66dde629e3bbb7febb38d0116e1a64df2;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 36572ed..195eb1f 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -277,7 +277,9 @@ label.show_selected_annotations = Show selected annotations
 label.group_consensus = Group Consensus
 label.group_conservation = Group Conservation
 label.show_consensus_histogram = Show Consensus Histogram
+label.show_ssconsensus_histogram = Show SS Consensus Histogram
 label.show_consensus_logo = Show Consensus Logo
+label.show_ssconsensus_logo = Show SS Consensus Logo
 label.norm_consensus_logo = Normalise Consensus Logo
 label.apply_all_groups = Apply to all groups
 label.autocalculated_annotation = Autocalculated Annotation
@@ -363,6 +365,7 @@ label.sequences_from = Sequences from {0}
 label.successfully_loaded_file  = Successfully loaded file {0}
 label.successfully_loaded_matrix  = Successfully loaded score matrix {0}
 label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format.
+label.successfully_printed_to_stdout_in_format = Successfully printed to STDOUT in {0} format.
 label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard.
 label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment.
 label.problem_reading_tcoffee_score_file = Problem reading T-COFFEE score file
@@ -703,7 +706,7 @@ label.sequence_details_for = Sequence Details for {0}
 label.sequence_name = Sequence Name
 label.sequence_description = Sequence Description
 label.edit_sequence_name_description = Edit Sequence Name/Description
-label.spaces_converted_to_underscores = Spaces have been converted to _
+label.spaces_converted_to_underscores = Spaces have been converted to underscores (_)
 label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name
 label.select_outline_colour = Select Outline Colour
 label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences."
@@ -1245,8 +1248,8 @@ label.mapping_method = Sequence \u27f7 Structure mapping method
 status.cancelled_image_export_operation = Cancelled {0} export operation
 info.error_creating_file = Error creating {0} file
 exception.outofmemory_loading_mmcif_file = Out of memory loading mmCIF File
-label.run_groovy = Run Groovy console script
-label.run_groovy_tip = Run the script in the Groovy console over this alignment
+label.run_groovy = Run Groovy Console Script
+label.run_groovy_tip = Run the script in the Groovy Console over this alignment
 label.couldnt_run_groovy_script = Failed to run Groovy script
 label.uniprot_sequence_fetcher = UniProt Sequence Fetcher
 action.next_page= >> 
@@ -1287,6 +1290,7 @@ label.togglehidden = Show hidden regions
 label.quality_descr = Alignment Quality based on Blosum62 scores
 label.conservation_descr = Conservation of total alignment less than {0}% gaps
 label.consensus_descr = PID
+label.ssconsensus_descr = SS Consensus
 label.complement_consensus_descr = PID for cDNA
 label.strucconsensus_descr = PID for base pairs
 label.occupancy_descr = Number of aligned positions 
@@ -1452,4 +1456,19 @@ label.choose_tempfac_type = Choose Temperature Factor type
 label.interpret_tempfac_as = Interpret Temperature Factor as
 label.add_pae_matrix_file = Add PAE matrix file
 label.nothing_selected = Nothing selected
-label.working_ellipsis = Working ... 
\ No newline at end of file
+prompt.analytics_title = Jalview Usage Statistics
+prompt.analytics = Do you want to help make Jalview better by enabling the collection of usage statistics with Plausible analytics?\nYou can enable or disable usage tracking in the preferences.
+label.working_ellipsis = Working ... 
+action.show_groups_on_matrix = Show groups on matrix
+action.show_groups_on_matrix_tooltip = When enabled, clusters defined on the matrix's associated tree or below the assigned threshold are shown as different colours on the matrix annotation row
+action.show_tree_for_matrix = Show tree for matrix
+action.show_tree_for_matrix_tooltip = Opens a tree viewer to display the average distance tree for the matrix
+action.cluster_matrix = Cluster matrix
+action.clustering_matrix_for = Calculating tree for matrix {0} and clustering at {1}
+action.cluster_matrix_tooltip = Computes an average distance tree for the matrix and displays it
+label.all_known_alignment_files = All known alignment files
+label.command_line_arguments = Command Line Arguments
+warning.using_old_command_line_arguments = It looks like you are using old command line arguments.  These are now deprecated and will be removed in a future release of Jalview.\nFind out about the new command line arguments at\n
+warning.using_mixed_command_line_arguments = Jalview cannot use both old (-arg) and new (--arg) command line arguments.  Please check your command line arguments.\ne.g. {0} and {1}
+warning.the_following_errors = The following errors and warnings occurred whilst processing files:
+action.show_hetatm = Show Ligands (HETATM)