X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=22754f87e218641e0545d66c1da49863b744d410;hb=76d3286a73053be49a8cfd6842fffba4db111e08;hp=56d6ca7e0ef1cd56eeb8a5e289bf89023d3e6703;hpb=68a5efb68bc2bbbaf928069011961425aac362d8;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 56d6ca7..22754f8 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -54,8 +54,8 @@ action.right_justify_alignment = Right Justify Alignment
 action.boxes = Boxes
 action.text = Text
 action.by_pairwise_id = by Pairwise Identity
-action.by_id = by Id
 action.by_length = by Length
+action.by_id = by Id
 action.by_group = by Group
 action.remove = Remove
 action.remove_redundancy = Remove Redundancy...
@@ -133,6 +133,8 @@ action.show_chain = Show Chain
 action.show_group = Show Group
 action.fetch_db_references = Fetch DB References
 action.edit = Edit
+action.view_flanking_regions = Show flanking regions
+label.view_flanking_regions = Show sequence data either side of the subsequences involved in this alignment
 label.str = Str:
 label.seq = Seq:
 label.structures_manager = Structures Manager
@@ -163,6 +165,15 @@ label.redo_command = Redo {0}
 label.principal_component_analysis = Principal Component Analysis
 label.average_distance_identity = Average Distance Using % Identity
 label.neighbour_joining_identity = Neighbour Joining Using % Identity
+label.treecalc_title = {0} Using {1}
+label.tree_calc_av = Average Distance
+label.tree_calc_nj = Neighbour Joining
+label.select_score_model = Select score model
+label.score_model_pid = % Identity
+label.score_model_blosum62 = BLOSUM62
+label.score_model_pam250 = PAM 250
+label.score_model_conservation = Physicochemical property conservation
+label.score_model_enhconservation = Physicochemical property conservation
 label.status_bar = Status bar
 label.out_to_textbox = Output to Textbox
 label.clustalx = Clustalx
@@ -212,6 +223,7 @@ label.all_columns = All Columns
 label.all_sequences = All Sequences
 label.selected_columns = Selected Columns 
 label.selected_sequences = Selected Sequences
+label.except_selected_sequences = All except selected sequences
 label.all_but_selected_region = All but Selected Region (Shift+Ctrl+H)
 label.selected_region = Selected Region
 label.all_sequences_columns = All Sequences and Columns
@@ -452,11 +464,11 @@ label.jalview_cut = Cut (Jalview Only)
 label.to_upper_case = To Upper Case
 label.to_lower_case = To Lower Case
 label.toggle_case = Toggle Case
-label.edit_name_description = Edit Name/Description
-label.create_sequence_feature = Create Sequence Feature
-label.edit_sequence = Edit Sequence
+label.edit_name_description = Edit Name/Description ...
+label.create_sequence_feature = Create Sequence Feature ...
 label.edit_sequences = Edit Sequences
 label.sequence_details = Sequence Details
+label.choose_annotations = Show/Hide Sequence Annotations
 label.jmol_help = Jmol Help
 label.all = All
 label.sort_by = Sort by
@@ -618,7 +630,7 @@ label.edit_name_and_description_current_group = Edit name and description of cur
 label.view_structure_for = View structure for {0}
 label.view_all_structures = View all {0} structures.
 label.view_all_representative_structures = View all {0} representative structures.
-label.open_new_jmol_view_with_all_representative_structures_associated_current_selection_superimpose_using_alignment = "Opens a new Jmol view with all representative structures\nassociated with the current selection\nsuperimposed with the current alignment."
+label.open_new_jmol_view_with_all_representative_structures_associated_current_selection_superimpose_using_alignment = Opens a new Jmol view with all representative structures\nassociated with the current selection\nsuperimposed with the current alignment.
 label.associate_structure_with_sequence = Associate Structure with Sequence
 label.from_file = from file
 label.enter_pdb_id = Enter PDB Id
@@ -674,7 +686,6 @@ label.case_sensitive = Case Sensitive
 label.lower_case_colour = Lower Case Colour
 label.index_by_host = Index by host
 label.index_by_type = Index by type
-label.enable_enfin_services = Enable Enfin Services
 label.enable_jabaws_services = Enable JABAWS Services
 label.display_warnings = Display warnings
 label.move_url_up = Move URL up
@@ -728,3 +739,6 @@ label.select_columns_containing = Select columns containing
 label.select_columns_not_containing = Select columns that do not contain
 option.trim_retrieved_seqs = Trim retrieved sequences
 label.trim_retrieved_sequences = When the reference sequence is longer than the sequence that you are working with, only keep the relevant subsequences.
+label.choose_annotations = Choose annotations to show or hide
+label.show_selected_annotations = Show selected annotation types
+label.hide_selected_annotations = Hide selected annotation types