X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=2450be820e5f8c0c53f4998876b729b5e8c6cfbf;hb=8a90391b6a6bd00adeb3289044fa34d88d74d978;hp=d6d30343a31e90899a2777d721f4ddfebee540af;hpb=bdf1428136ce701e58a90f346973dbdf9d42b316;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index d6d3034..2450be8 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -3,6 +3,9 @@ action.reset_services = Reset Services
 action.merge_results = Merge Results
 action.load_scheme = Load scheme
 action.save_scheme = Save scheme
+label.scheme_changed = Changes to scheme {0} have not been saved<br>Save changes, or continue without saving to make a new colour scheme
+label.save_changes = Save Changes
+label.dont_save_changes = Don't Save
 action.save_image = Save Image
 action.paste = Paste
 action.show_html_source = Show HTML Source
@@ -68,7 +71,6 @@ action.show_gaps = Show Gaps
 action.show_hidden_markers = Show Hidden Markers
 action.find = Find
 action.undefine_groups = Undefine Groups
-action.create_groups = Create Groups
 action.make_groups_selection = Make Groups For Selection
 action.copy = Copy
 action.cut = Cut
@@ -78,7 +80,8 @@ action.scale_left = Scale Left
 action.scale_right = Scale Right
 action.by_tree_order = By Tree Order
 action.sort = Sort
-action.calculate_tree = Calculate Tree
+action.calculate_tree = Calculate Tree...
+action.calculate_tree_pca = Calculate Tree or PCA...
 action.help = Help
 action.by_annotation = By Annotation...
 action.invert_sequence_selection = Invert Sequence Selection
@@ -168,6 +171,7 @@ label.redo_command = Redo {0}
 label.principal_component_analysis = Principal Component Analysis
 label.average_distance_identity = Average Distance Using % Identity
 label.neighbour_joining_identity = Neighbour Joining Using % Identity
+label.choose_calculation = Choose Calculation
 label.treecalc_title = {0} Using {1}
 label.tree_calc_av = Average Distance
 label.tree_calc_nj = Neighbour Joining
@@ -175,6 +179,8 @@ label.select_score_model = Select score model
 label.score_model_pid = % Identity
 label.score_model_blosum62 = BLOSUM62
 label.score_model_pam250 = PAM 250
+label.score_model_smithwatermanscore = Score between two sequences aligned with Smith-Waterman with default Peptide/Nucleotide matrix
+label.score_model_sequencefeaturesimilarity = Distance measure of average number of features not shared at sequence positions 
 label.score_model_conservation = Physicochemical property conservation
 label.score_model_enhconservation = Physicochemical property conservation
 label.status_bar = Status bar
@@ -330,6 +336,7 @@ label.colour_residues_above_occurrence = Colour residues above % occurrence
 label.set_this_label_text = set this label text
 label.sequences_from = Sequences from {0}
 label.successfully_loaded_file  = Successfully loaded file {0}
+label.successfully_loaded_matrix  = Successfully loaded score matrix {0}
 label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format.
 label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard.
 label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment.
@@ -669,8 +676,7 @@ label.2d_rna_sequence_name = 2D RNA - {0}
 label.edit_name_and_description_current_group = Edit name and description of current group
 label.from_file = From File
 label.enter_pdb_id = Enter PDB Id (or pdbid:chaincode)
-label.text_colour = Text Colour
-action.set_text_colour = Text Colour...
+label.text_colour = Text Colour...
 label.structure = Structure
 label.show_pdbstruct_dialog = 3D Structure Data...
 label.view_rna_structure = VARNA 2D Structure
@@ -897,6 +903,7 @@ label.choose_filename_for_param_file = Choose a filename for this parameter file
 label.save_as_html = Save as HTML
 label.recently_opened = Recently Opened
 label.blasting_for_unidentified_sequence_jobs_running = BLASTing for unidentified sequences - {0}  jobs running.
+label.tree = Tree
 label.tree_from = Tree from {0}
 label.webservice_job_title = {0} using {1}
 label.select_visible_region_of = selected {0} region of {1}