X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=36572ed894771f7647625719930931e731be3f85;hb=beb2fee66dde629e3bbb7febb38d0116e1a64df2;hp=023f5916acfac002d52581a7299f7721ced0a94c;hpb=48c58bc96e903574bca0c825321ac9f1513b8a78;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 023f591..36572ed 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -32,7 +32,20 @@ action.load_project = Load Project
 action.save_project = Save Project
 action.save_project_as = Save Project as...
 action.quit = Quit
-label.quit_jalview = Quit Jalview?
+action.force_quit = Force quit
+label.quit_jalview = Are you sure you want to quit Jalview?
+label.wait_for_save = Wait for save
+label.unsaved_changes = There are unsaved changes.
+label.unsaved_alignments = There are unsaved alignments.
+label.save_in_progress = Some files are still saving:
+label.confirm_quit_viewer = An external viewer is still open.  Close the external window as well?
+label.confirm_quit_viewers = External viewers are still open.  Close these external windows as well?
+label.unknown = Unknown
+label.quit_after_saving = Jalview will quit after saving.
+label.all_saved = All files saved.
+label.quitting_bye = Quitting, bye!
+action.wait = Wait
+action.cancel_quit = Cancel quit
 action.expand_views = Expand Views
 action.gather_views = Gather Views
 action.page_setup = Page Setup...
@@ -130,6 +143,8 @@ action.calculate = Calculate
 action.select_all = Select all
 action.select_highlighted_columns = Select Highlighted Columns
 tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns 
+action.copy_highlighted_regions = Copy Highlighted Regions
+tooltip.copy_highlighted_regions = Copies highlighted sequence regions to the clipboard for export or further analysis
 action.deselect_all = Deselect all
 action.invert_selection = Invert selection
 action.using_jmol = Using Jmol
@@ -189,7 +204,7 @@ label.occupancy = Occupancy
 # delete Clustal - use FileFormat name instead
 label.clustal = Clustal
 # label.colourScheme_<schemeName> as in JalviewColourScheme, spaces removed
-label.colourScheme_clustal = Clustalx
+label.colourScheme_clustal = Clustal
 label.colourScheme_blosum62 = BLOSUM62 Score
 label.colourScheme_%identity = Percentage Identity
 label.colourScheme_zappo = Zappo
@@ -201,9 +216,14 @@ label.colourScheme_turnpropensity = Turn Propensity
 label.colourScheme_buriedindex = Buried Index
 label.colourScheme_purine/pyrimidine = Purine/Pyrimidine
 label.colourScheme_nucleotide = Nucleotide
+label.colourScheme_nucleotideambiguity = Nucleotide Ambiguity
 label.colourScheme_t-coffeescores = T-Coffee Scores
 label.colourScheme_rnahelices = By RNA Helices
 label.colourScheme_sequenceid = Sequence ID Colour
+label.colourScheme_gecos-flower = gecos Flower
+label.colourScheme_gecos-blossom = gecos Blossom
+label.colourScheme_gecos-sunset = gecos Sunset
+label.colourScheme_gecos-ocean = gecos Ocean
 label.blc = BLC
 label.fasta = Fasta
 label.msf = MSF
@@ -429,6 +449,7 @@ label.input_cut_paste_params = Cut & Paste Input - {0}
 label.alignment_output_command = Alignment output - {0}
 label.annotations = Annotations
 label.structure_options = Structure Options
+label.structure_import_options = Structure Import Options
 label.features = Features
 label.overview_params = Overview {0}
 label.paste_newick_file = Paste Newick file
@@ -497,6 +518,7 @@ label.delete_gaps = Delete {0} gaps
 label.sequence_details = Sequence Details
 label.viewer_help = {0} Help
 label.close_viewer = Close Viewer
+label.close_viewers = Close Viewers
 label.confirm_close_viewer = This will close Jalview''s connection to {0}.<br>Do you want to close the {1} window as well?
 label.all = All
 label.sort_by = Sort alignment by
@@ -514,11 +536,11 @@ label.retrieve_parse_sequence_database_records_alignment_or_selected_sequences =
 label.standard_databases = Standard Databases
 label.fetch_embl_uniprot = Fetch from EMBL/EMBLCDS or Uniprot/PDB and any selected DAS sources
 label.fetch_uniprot_references = Fetch Uniprot references
-label.search_3dbeacons = 3D-Beacons Search
+label.search_3dbeacons = Search 3D-Beacons
 label.find_models_from_3dbeacons = Search 3D-Beacons for 3D structures and models
 label.3dbeacons = 3D-Beacons
 label.fetch_references_for = Fetch database references for {0} sequences ?
-label.fetch_references_for_3dbeacons = 3D Beacons needs Uniprot References. Fetch database references for {0} sequences ?
+label.fetch_references_for_3dbeacons = 3D Beacons needs to fetch Uniprot References for {0} sequences.  Do you want to continue ?
 label.reset_min_max_colours_to_defaults = Reset min and max colours to defaults from user preferences.
 label.align_structures_using_linked_alignment_views = Superpose structures using {0} selected alignment view(s)
 label.threshold_feature_display_by_score = Threshold the feature display by score.
@@ -532,6 +554,7 @@ label.select_colour_maximum_value = Select Colour for Maximum Value
 label.open_url_param = Open URL {0}
 label.open_url_seqs_param = Open URL ({0}..) ({1} seqs)
 label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0}
+label.load_pae_matrix_file_associate_with_structure = Load a PAE matrix file and associate it with structure {0}
 label.reveal_hidden_columns = Reveal Hidden Columns with Right Mouse Button
 label.dark_colour = Dark Colour
 label.light_colour = Light Colour
@@ -587,7 +610,7 @@ label.nuc_alignment_colour = Nucleotide Alignment Colour
 label.address = Address
 label.host = Host
 label.port = Port
-label.default_browser_unix = Default Browser (Unix)
+label.default_browser_unix_windows = Default Browser (Unix, Windows)
 label.send_usage_statistics = Send usage statistics
 label.check_for_questionnaires = Check for questionnaires
 label.check_for_latest_version = Check for latest version
@@ -686,6 +709,7 @@ label.select_outline_colour = Select Outline Colour
 label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences."
 label.web_browser_not_found = Web browser not found
 label.select_pdb_file_for = Select a PDB file for {0}
+label.select_pae_matrix_file_for = Select a PAE matrix file for {0}
 label.html = HTML
 label.wrap = Wrap
 label.show_database_refs = Show Database Refs
@@ -778,8 +802,10 @@ label.transformed_points_for_params = Transformed points for {0}
 label.variable_color_for = Variable Feature Colour for {0}
 label.select_background_colour = Select Background Colour
 label.invalid_font = Invalid Font
+label.search_db_all = Search all of {0}
+label.search_db_index = Search {0} index {1}
 label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";"
-label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";"
+label.separate_multiple_query_values = Enter one or more {0} separated by a semi-colon ";"
 label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This searches the entire database)
 label.replace_commas_semicolons = Replace commas with semi-colons
 label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0}
@@ -1048,7 +1074,9 @@ exception.unknown_annotation_detected = Unknown annotation detected: {0} {1}
 exception.couldnt_store_sequence_mappings = Couldn''t store sequence mappings for {0}
 exception.matrix_too_many_iteration = Too many iterations in {0} (max is {1})
 exception.browser_not_found = Exception in finding browser: {0}
+exception.browser_unable_to_launch = Unable to launch browser: {0}
 exception.browser_unable_to_locate = Unable to locate browser: {0}
+exception.browser_os_not_supported = Launching browser on this operating system not supported.  Use URL\n{0}
 exception.invocation_target_exception_creating_aedesc = InvocationTargetException while creating AEDesc: {0}
 exception.illegal_access_building_apple_evt= IllegalAccessException while building AppleEvent: {0}
 exception.unable_to_launch_url = Unable to launch URL: {0}
@@ -1330,6 +1358,7 @@ label.backupfiles_confirm_save_file_backupfiles_roll_wrong = Something possibly
 label.backupfiles_confirm_save_new_saved_file_ok = The new saved file seems okay.
 label.backupfiles_confirm_save_new_saved_file_not_ok = The new saved file might not be okay.
 label.continue_operation = Continue operation?
+label.continue = Continue
 label.backups = Backups
 label.backup = Backup
 label.backup_files = Backup Files
@@ -1389,6 +1418,8 @@ label.click_to_edit = Click to edit, right-click for menu
 label.by_annotation_tooltip = Annotation Colour is configured from the main Colour menu
 label.show_linked_features = Show {0} features
 label.on_top = on top
+label.include_features = Include Features
+label.search_features = Search descriptions of displayed features
 label.include_linked_features = Include {0} features
 label.include_linked_tooltip = Include visible {0} features<br>converted to local sequence coordinates
 label.features_not_shown = {0} feature(s) not shown
@@ -1397,6 +1428,7 @@ label.ignore_hidden = Ignore hidden columns
 label.ignore_hidden_tooltip = Ignore any characters in hidden columns when matching
 label.log_level = Log level
 label.log_level_tooltip = Temporarily set the log level for this console. The log level will revert to {0} when this Java console is closed.
+label.copy = Copy
 label.copy_to_clipboard = Copy to clipboard
 label.copy_to_clipboard_tooltip = Copy all of the log text in this console to the system clipboard
 label.startup = Startup
@@ -1410,3 +1442,14 @@ label.maximum_memory_tooltip = Enter memory as an integer number optionally foll
 label.adjustments_for_this_computer = Adjustments for this computer
 label.memory_example_text = Maximum memory that would be used with these settings on this computer
 label.memory_example_tooltip = The memory allocated to Jalview is the smaller of the percentage of physical memory (default 90%) and the maximum absolute memory (default 32GB). If your computer's memory cannot be ascertained then the maximum absolute memory defaults to 8GB (if not customised).<br>Jalview will always try and reserve 512MB for the OS and at least 512MB for itself.
+warning.wrong_jvm_version_title = Wrong Java Version
+warning.wrong_jvm_version_message = The Java version being used (Java {0}) may lead to problems.\nThis installation of Jalview should be used with Java {1}.
+label.alphafold_reliability = Alphafold Reliability
+label.tftype_default = Default
+label.tftype_plddt = pLDDT
+label.optional = (optional)
+label.choose_tempfac_type = Choose Temperature Factor type
+label.interpret_tempfac_as = Interpret Temperature Factor as
+label.add_pae_matrix_file = Add PAE matrix file
+label.nothing_selected = Nothing selected
+label.working_ellipsis = Working ... 
\ No newline at end of file