X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=3843ddb0002ed33fe25b6441f9e1772bfe4826ab;hb=refs%2Fheads%2Fdevelop;hp=58f98053b7a4164b5b3688d568fdb912330340ed;hpb=39c97de2f7b8ef87b42f121f37d4f158d1651fe9;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 58f9805..293f612 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -66,8 +66,10 @@ action.remove_left = Remove left
 action.remove_right = Remove right
 action.remove_empty_columns = Remove Empty Columns
 action.remove_all_gaps = Remove All Gaps
-action.left_justify_alignment = Left Justify Alignment
-action.right_justify_alignment = Right Justify Alignment
+tooltip.left_justify = Left justify whole alignment or selected region
+tooltip.right_justify = Right justify whole alignment or selected region
+action.left_justify = Left Justify
+action.right_justify = Right Justify
 action.boxes = Boxes
 action.text = Text
 action.by_pairwise_id = By Pairwise Identity
@@ -96,7 +98,7 @@ action.scale_right = Scale Right
 action.by_tree_order = By Tree Order
 action.sort = Sort
 action.calculate_tree = Calculate Tree...
-action.calculate_tree_pca = Calculate Tree or PCA...
+action.calculate_tree_pca = Calculate Tree, PCA or PaSiMap...
 action.help = Help
 action.by_annotation = By Annotation...
 action.invert_sequence_selection = Invert Sequence Selection
@@ -185,6 +187,7 @@ label.amend = Amend
 label.undo_command = Undo {0}
 label.redo_command = Redo {0}
 label.principal_component_analysis = Principal Component Analysis
+label.pasimap = PaSiMap
 label.average_distance_identity = Average Distance Using % Identity
 label.neighbour_joining_identity = Neighbour Joining Using % Identity
 label.choose_calculation = Choose Calculation
@@ -277,10 +280,13 @@ label.show_selected_annotations = Show selected annotations
 label.group_consensus = Group Consensus
 label.group_conservation = Group Conservation
 label.show_consensus_histogram = Show Consensus Histogram
+label.show_ssconsensus_histogram = Show SS Consensus Histogram
 label.show_consensus_logo = Show Consensus Logo
+label.show_ssconsensus_logo = Show SS Consensus Logo
 label.norm_consensus_logo = Normalise Consensus Logo
 label.apply_all_groups = Apply to all groups
 label.autocalculated_annotation = Autocalculated Annotation
+label.show_secondary_structure = Show Secondary Structure
 label.show_first = Show first
 label.show_last = Show last
 label.struct_from_pdb = Process secondary structure from PDB
@@ -314,6 +320,8 @@ label.labels = Labels
 label.output_values = Output Values...
 label.output_points = Output points...
 label.output_transformed_points = Output transformed points
+label.output_alignment = Output pairwise alignments
+label.pairwise_alignment_for_params = Pairwise alignments for {0}
 label.input_data = Input Data...
 label.nucleotide_matrix = Nucleotide matrix
 label.protein_matrix = Protein matrix
@@ -460,6 +468,7 @@ label.selection_output_command = Selection output - {0}
 label.annotation_for_displayid = <p><h2>Annotation for {0} </h2></p><p>
 label.pdb_sequence_mapping = PDB - Sequence Mapping
 label.pca_details = PCA details
+label.pasimap_details = PaSiMap details
 label.redundancy_threshold_selection = Redundancy threshold selection
 label.user_defined_colours = User defined colours
 label.jalviewLite_release = JalviewLite - Release {0}
@@ -599,6 +608,7 @@ label.quality = Quality
 label.maximize_window = Maximize Window
 label.conservation = Conservation
 label.consensus = Consensus
+label.ssConsensus = Secondary Structure Consensus
 label.histogram = Histogram
 label.logo = Logo
 label.non_positional_features = List Non-positional Features
@@ -1024,6 +1034,8 @@ label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service
 label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry
 label.pca_recalculating = Recalculating PCA
 label.pca_calculating = Calculating PCA
+label.pasimap_recalculating = Recalculating PaSiMap
+label.pasimap_calculating = Calculating PaSiMap
 label.select_foreground_colour = Choose foreground colour
 label.select_colour_for_text = Select Colour for Text
 label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold
@@ -1246,8 +1258,8 @@ label.mapping_method = Sequence \u27f7 Structure mapping method
 status.cancelled_image_export_operation = Cancelled {0} export operation
 info.error_creating_file = Error creating {0} file
 exception.outofmemory_loading_mmcif_file = Out of memory loading mmCIF File
-label.run_groovy = Run Groovy console script
-label.run_groovy_tip = Run the script in the Groovy console over this alignment
+label.run_groovy = Run Groovy Console Script
+label.run_groovy_tip = Run the script in the Groovy Console over this alignment
 label.couldnt_run_groovy_script = Failed to run Groovy script
 label.uniprot_sequence_fetcher = UniProt Sequence Fetcher
 action.next_page= >> 
@@ -1288,6 +1300,8 @@ label.togglehidden = Show hidden regions
 label.quality_descr = Alignment Quality based on Blosum62 scores
 label.conservation_descr = Conservation of total alignment less than {0}% gaps
 label.consensus_descr = PID
+label.ssconsensus_label = Secondary Structure Consensus
+label.ssconsensus_descr = SS Consensus
 label.complement_consensus_descr = PID for cDNA
 label.strucconsensus_descr = PID for base pairs
 label.occupancy_descr = Number of aligned positions 
@@ -1350,6 +1364,7 @@ label.annotation_description = Annotation Description
 label.edit_annotation_name_description = Edit Annotation Name/Description
 label.alignment = alignment
 label.pca = PCA
+label.pasimap = PaSiMap
 label.create_image_of = Create {0} image of {1}
 label.click_to_edit = Click to edit, right-click for menu
 label.backupfiles_confirm_delete = Confirm delete