X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=3843ddb0002ed33fe25b6441f9e1772bfe4826ab;hb=refs%2Fheads%2Fdevelop;hp=73da48cf34c6e6fa3e884491e843573d25a1a7ba;hpb=b364e1e6d199002069dab615d1007799b5bb71e1;p=jalview.git diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index 73da48c..9df42b9 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -32,11 +32,18 @@ action.load_project = Load Project action.save_project = Save Project action.save_project_as = Save Project as... action.quit = Quit -action.force_quit = Force Quit +action.force_quit = Force quit label.quit_jalview = Are you sure you want to quit Jalview? +label.wait_for_save = Wait for save label.unsaved_changes = There are unsaved changes. +label.unsaved_alignments = There are unsaved alignments. label.save_in_progress = Some files are still saving: +label.confirm_quit_viewer = An external viewer is still open. Close the external window as well? +label.confirm_quit_viewers = External viewers are still open. Close these external windows as well? label.unknown = Unknown +label.quit_after_saving = Jalview will quit after saving. +label.all_saved = All files saved. +label.quitting_bye = Quitting, bye! action.wait = Wait action.cancel_quit = Cancel quit action.expand_views = Expand Views @@ -59,8 +66,10 @@ action.remove_left = Remove left action.remove_right = Remove right action.remove_empty_columns = Remove Empty Columns action.remove_all_gaps = Remove All Gaps -action.left_justify_alignment = Left Justify Alignment -action.right_justify_alignment = Right Justify Alignment +tooltip.left_justify = Left justify whole alignment or selected region +tooltip.right_justify = Right justify whole alignment or selected region +action.left_justify = Left Justify +action.right_justify = Right Justify action.boxes = Boxes action.text = Text action.by_pairwise_id = By Pairwise Identity @@ -89,7 +98,7 @@ action.scale_right = Scale Right action.by_tree_order = By Tree Order action.sort = Sort action.calculate_tree = Calculate Tree... -action.calculate_tree_pca = Calculate Tree or PCA... +action.calculate_tree_pca = Calculate Tree, PCA or PaSiMap... action.help = Help action.by_annotation = By Annotation... action.invert_sequence_selection = Invert Sequence Selection @@ -136,6 +145,8 @@ action.calculate = Calculate action.select_all = Select all action.select_highlighted_columns = Select Highlighted Columns tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns +action.copy_highlighted_regions = Copy Highlighted Regions +tooltip.copy_highlighted_regions = Copies highlighted sequence regions to the clipboard for export or further analysis action.deselect_all = Deselect all action.invert_selection = Invert selection action.using_jmol = Using Jmol @@ -176,6 +187,7 @@ label.amend = Amend label.undo_command = Undo {0} label.redo_command = Redo {0} label.principal_component_analysis = Principal Component Analysis +label.pasimap = PaSiMap label.average_distance_identity = Average Distance Using % Identity label.neighbour_joining_identity = Neighbour Joining Using % Identity label.choose_calculation = Choose Calculation @@ -207,13 +219,14 @@ label.colourScheme_turnpropensity = Turn Propensity label.colourScheme_buriedindex = Buried Index label.colourScheme_purine/pyrimidine = Purine/Pyrimidine label.colourScheme_nucleotide = Nucleotide +label.colourScheme_nucleotideambiguity = Nucleotide Ambiguity label.colourScheme_t-coffeescores = T-Coffee Scores label.colourScheme_rnahelices = By RNA Helices label.colourScheme_sequenceid = Sequence ID Colour -label.colourScheme_gecos\:flower = gecos Flower -label.colourScheme_gecos\:blossom = gecos Blossom -label.colourScheme_gecos\:sunset = gecos Sunset -label.colourScheme_gecos\:ocean = gecos Ocean +label.colourScheme_gecos-flower = gecos Flower +label.colourScheme_gecos-blossom = gecos Blossom +label.colourScheme_gecos-sunset = gecos Sunset +label.colourScheme_gecos-ocean = gecos Ocean label.blc = BLC label.fasta = Fasta label.msf = MSF @@ -265,12 +278,17 @@ label.all_sequences_columns = All Sequences and Columns label.hide_selected_annotations = Hide selected annotations label.show_selected_annotations = Show selected annotations label.group_consensus = Group Consensus +label.group_ss_consensus = Group Secondary Structure Consensus label.group_conservation = Group Conservation label.show_consensus_histogram = Show Consensus Histogram +label.show_ssconsensus_histogram = Show SS Consensus Histogram label.show_consensus_logo = Show Consensus Logo +label.show_ssconsensus_logo = Show SS Consensus Logo label.norm_consensus_logo = Normalise Consensus Logo label.apply_all_groups = Apply to all groups label.autocalculated_annotation = Autocalculated Annotation +label.show_secondary_structure = Show Secondary Structure +label.show_secondary_structure_consensus = Show Secondary Structure Consensus label.show_first = Show first label.show_last = Show last label.struct_from_pdb = Process secondary structure from PDB @@ -304,6 +322,8 @@ label.labels = Labels label.output_values = Output Values... label.output_points = Output points... label.output_transformed_points = Output transformed points +label.output_alignment = Output pairwise alignments +label.pairwise_alignment_for_params = Pairwise alignments for {0} label.input_data = Input Data... label.nucleotide_matrix = Nucleotide matrix label.protein_matrix = Protein matrix @@ -353,6 +373,7 @@ label.sequences_from = Sequences from {0} label.successfully_loaded_file = Successfully loaded file {0} label.successfully_loaded_matrix = Successfully loaded score matrix {0} label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format. +label.successfully_printed_to_stdout_in_format = Successfully printed to STDOUT in {0} format. label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard. label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment. label.problem_reading_tcoffee_score_file = Problem reading T-COFFEE score file @@ -382,7 +403,7 @@ label.selected_database_to_fetch_from = Selected {0} database {1} to fetch from label.database_param = Database: {0} label.example = Example label.example_param = Example: {0} -label.select_file_format_before_saving = You must select a file format before saving! +label.select_file_format_before_saving = You must select a file format or use a recognised file extension before saving! label.file_format_not_specified = File format not specified label.couldnt_save_file = Couldn''t save file: {0} label.error_saving_file = Error Saving File @@ -439,6 +460,7 @@ label.input_cut_paste_params = Cut & Paste Input - {0} label.alignment_output_command = Alignment output - {0} label.annotations = Annotations label.structure_options = Structure Options +label.structure_import_options = Structure Import Options label.features = Features label.overview_params = Overview {0} label.paste_newick_file = Paste Newick file @@ -448,6 +470,7 @@ label.selection_output_command = Selection output - {0} label.annotation_for_displayid =
label.pdb_sequence_mapping = PDB - Sequence Mapping
label.pca_details = PCA details
+label.pasimap_details = PaSiMap details
label.redundancy_threshold_selection = Redundancy threshold selection
label.user_defined_colours = User defined colours
label.jalviewLite_release = JalviewLite - Release {0}
@@ -507,6 +530,7 @@ label.delete_gaps = Delete {0} gaps
label.sequence_details = Sequence Details
label.viewer_help = {0} Help
label.close_viewer = Close Viewer
+label.close_viewers = Close Viewers
label.confirm_close_viewer = This will close Jalview''s connection to {0}.
Do you want to close the {1} window as well?
label.all = All
label.sort_by = Sort alignment by
@@ -542,6 +566,7 @@ label.select_colour_maximum_value = Select Colour for Maximum Value
label.open_url_param = Open URL {0}
label.open_url_seqs_param = Open URL ({0}..) ({1} seqs)
label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0}
+label.load_pae_matrix_file_associate_with_structure = Load a PAE matrix file and associate it with structure {0}
label.reveal_hidden_columns = Reveal Hidden Columns with Right Mouse Button
label.dark_colour = Dark Colour
label.light_colour = Light Colour
@@ -585,6 +610,7 @@ label.quality = Quality
label.maximize_window = Maximize Window
label.conservation = Conservation
label.consensus = Consensus
+label.ssConsensus = Secondary Structure Consensus
label.histogram = Histogram
label.logo = Logo
label.non_positional_features = List Non-positional Features
@@ -690,12 +716,13 @@ label.sequence_details_for = Sequence Details for {0}
label.sequence_name = Sequence Name
label.sequence_description = Sequence Description
label.edit_sequence_name_description = Edit Sequence Name/Description
-label.spaces_converted_to_underscores = Spaces have been converted to _
+label.spaces_converted_to_underscores = Spaces have been converted to underscores (_)
label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name
label.select_outline_colour = Select Outline Colour
label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences."
label.web_browser_not_found = Web browser not found
label.select_pdb_file_for = Select a PDB file for {0}
+label.select_pae_matrix_file_for = Select a PAE matrix file for {0}
label.html = HTML
label.wrap = Wrap
label.show_database_refs = Show Database Refs
@@ -1009,6 +1036,8 @@ label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service
label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry
label.pca_recalculating = Recalculating PCA
label.pca_calculating = Calculating PCA
+label.pasimap_recalculating = Recalculating PaSiMap
+label.pasimap_calculating = Calculating PaSiMap
label.select_foreground_colour = Choose foreground colour
label.select_colour_for_text = Select Colour for Text
label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold
@@ -1231,8 +1260,8 @@ label.mapping_method = Sequence \u27f7 Structure mapping method
status.cancelled_image_export_operation = Cancelled {0} export operation
info.error_creating_file = Error creating {0} file
exception.outofmemory_loading_mmcif_file = Out of memory loading mmCIF File
-label.run_groovy = Run Groovy console script
-label.run_groovy_tip = Run the script in the Groovy console over this alignment
+label.run_groovy = Run Groovy Console Script
+label.run_groovy_tip = Run the script in the Groovy Console over this alignment
label.couldnt_run_groovy_script = Failed to run Groovy script
label.uniprot_sequence_fetcher = UniProt Sequence Fetcher
action.next_page= >>
@@ -1273,6 +1302,8 @@ label.togglehidden = Show hidden regions
label.quality_descr = Alignment Quality based on Blosum62 scores
label.conservation_descr = Conservation of total alignment less than {0}% gaps
label.consensus_descr = PID
+label.ssconsensus_label = Secondary Structure Consensus
+label.ssconsensus_descr = Secondary Structure Consensus
label.complement_consensus_descr = PID for cDNA
label.strucconsensus_descr = PID for base pairs
label.occupancy_descr = Number of aligned positions
@@ -1335,6 +1366,7 @@ label.annotation_description = Annotation Description
label.edit_annotation_name_description = Edit Annotation Name/Description
label.alignment = alignment
label.pca = PCA
+label.pasimap = PaSiMap
label.create_image_of = Create {0} image of {1}
label.click_to_edit = Click to edit, right-click for menu
label.backupfiles_confirm_delete = Confirm delete
@@ -1404,6 +1436,8 @@ label.click_to_edit = Click to edit, right-click for menu
label.by_annotation_tooltip = Annotation Colour is configured from the main Colour menu
label.show_linked_features = Show {0} features
label.on_top = on top
+label.include_features = Include Features
+label.search_features = Search descriptions of displayed features
label.include_linked_features = Include {0} features
label.include_linked_tooltip = Include visible {0} features
converted to local sequence coordinates
label.features_not_shown = {0} feature(s) not shown
@@ -1412,6 +1446,7 @@ label.ignore_hidden = Ignore hidden columns
label.ignore_hidden_tooltip = Ignore any characters in hidden columns when matching
label.log_level = Log level
label.log_level_tooltip = Temporarily set the log level for this console. The log level will revert to {0} when this Java console is closed.
+label.copy = Copy
label.copy_to_clipboard = Copy to clipboard
label.copy_to_clipboard_tooltip = Copy all of the log text in this console to the system clipboard
label.startup = Startup
@@ -1427,3 +1462,31 @@ label.memory_example_text = Maximum memory that would be used with these setting
label.memory_example_tooltip = The memory allocated to Jalview is the smaller of the percentage of physical memory (default 90%) and the maximum absolute memory (default 32GB). If your computer's memory cannot be ascertained then the maximum absolute memory defaults to 8GB (if not customised).
Jalview will always try and reserve 512MB for the OS and at least 512MB for itself.
warning.wrong_jvm_version_title = Wrong Java Version
warning.wrong_jvm_version_message = The Java version being used (Java {0}) may lead to problems.\nThis installation of Jalview should be used with Java {1}.
+label.alphafold_reliability = Alphafold Reliability
+label.tftype_default = Default
+label.tftype_plddt = pLDDT
+label.optional = (optional)
+label.choose_tempfac_type = Choose Temperature Factor type
+label.interpret_tempfac_as = Interpret Temperature Factor as
+label.add_pae_matrix_file = Add PAE matrix file
+label.nothing_selected = Nothing selected
+prompt.analytics_title = Jalview Usage Statistics
+prompt.analytics = Do you want to help make Jalview better by enabling the collection of usage statistics with Plausible analytics?\nYou can enable or disable usage tracking in the preferences.
+label.working_ellipsis = Working ...
+action.show_groups_on_matrix = Show groups on matrix
+action.show_groups_on_matrix_tooltip = When enabled, clusters defined on the matrix's associated tree or below the assigned threshold are shown as different colours on the matrix annotation row
+action.show_tree_for_matrix = Show tree for matrix
+action.show_tree_for_matrix_tooltip = Opens a tree viewer to display the average distance tree for the matrix
+action.cluster_matrix = Cluster matrix
+action.clustering_matrix_for = Calculating tree for matrix {0} and clustering at {1}
+action.cluster_matrix_tooltip = Computes an average distance tree for the matrix and displays it
+label.all_known_alignment_files = All known alignment files
+label.by_extension = By extension
+label.by_extension_tooltip = File will be saved in a format corresponding to the given file extension
+label.command_line_arguments = Command Line Arguments
+warning.using_old_command_line_arguments = It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview.\nFind out about the new command line arguments at\n
+warning.using_mixed_command_line_arguments = Jalview cannot use both old (-arg) and new (--arg) command line arguments. Please check your command line arguments.\ne.g. {0} and {1}
+warning.the_following_errors = The following errors and warnings occurred whilst processing files:
+action.show_hetatm = Show Ligands (HETATM)
+warning.running_from_installer_volume_title = Running from Installer
+warning.running_from_installer_volume_message = You appear to be launching {0} from the Installer volume.\nPlease drag and drop the "{0}" icon into the Applications folder or your user Applications folder, and launch from there.