X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=3843ddb0002ed33fe25b6441f9e1772bfe4826ab;hb=refs%2Fheads%2Fdevelop;hp=e04c3e8a0d54691d88111608e5f5f82ab3bd08a3;hpb=09be4c7dd6a31d9a39e5317cc8dc9eb21e8e6ebf;p=jalview.git diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index e04c3e8..293f612 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -36,7 +36,10 @@ action.force_quit = Force quit label.quit_jalview = Are you sure you want to quit Jalview? label.wait_for_save = Wait for save label.unsaved_changes = There are unsaved changes. +label.unsaved_alignments = There are unsaved alignments. label.save_in_progress = Some files are still saving: +label.confirm_quit_viewer = An external viewer is still open. Close the external window as well? +label.confirm_quit_viewers = External viewers are still open. Close these external windows as well? label.unknown = Unknown label.quit_after_saving = Jalview will quit after saving. label.all_saved = All files saved. @@ -63,8 +66,10 @@ action.remove_left = Remove left action.remove_right = Remove right action.remove_empty_columns = Remove Empty Columns action.remove_all_gaps = Remove All Gaps -action.left_justify_alignment = Left Justify Alignment -action.right_justify_alignment = Right Justify Alignment +tooltip.left_justify = Left justify whole alignment or selected region +tooltip.right_justify = Right justify whole alignment or selected region +action.left_justify = Left Justify +action.right_justify = Right Justify action.boxes = Boxes action.text = Text action.by_pairwise_id = By Pairwise Identity @@ -93,7 +98,7 @@ action.scale_right = Scale Right action.by_tree_order = By Tree Order action.sort = Sort action.calculate_tree = Calculate Tree... -action.calculate_tree_pca = Calculate Tree or PCA... +action.calculate_tree_pca = Calculate Tree, PCA or PaSiMap... action.help = Help action.by_annotation = By Annotation... action.invert_sequence_selection = Invert Sequence Selection @@ -140,6 +145,8 @@ action.calculate = Calculate action.select_all = Select all action.select_highlighted_columns = Select Highlighted Columns tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns +action.copy_highlighted_regions = Copy Highlighted Regions +tooltip.copy_highlighted_regions = Copies highlighted sequence regions to the clipboard for export or further analysis action.deselect_all = Deselect all action.invert_selection = Invert selection action.using_jmol = Using Jmol @@ -180,6 +187,7 @@ label.amend = Amend label.undo_command = Undo {0} label.redo_command = Redo {0} label.principal_component_analysis = Principal Component Analysis +label.pasimap = PaSiMap label.average_distance_identity = Average Distance Using % Identity label.neighbour_joining_identity = Neighbour Joining Using % Identity label.choose_calculation = Choose Calculation @@ -215,10 +223,10 @@ label.colourScheme_nucleotideambiguity = Nucleotide Ambiguity label.colourScheme_t-coffeescores = T-Coffee Scores label.colourScheme_rnahelices = By RNA Helices label.colourScheme_sequenceid = Sequence ID Colour -label.colourScheme_gecos\:flower = gecos Flower -label.colourScheme_gecos\:blossom = gecos Blossom -label.colourScheme_gecos\:sunset = gecos Sunset -label.colourScheme_gecos\:ocean = gecos Ocean +label.colourScheme_gecos-flower = gecos Flower +label.colourScheme_gecos-blossom = gecos Blossom +label.colourScheme_gecos-sunset = gecos Sunset +label.colourScheme_gecos-ocean = gecos Ocean label.blc = BLC label.fasta = Fasta label.msf = MSF @@ -272,10 +280,13 @@ label.show_selected_annotations = Show selected annotations label.group_consensus = Group Consensus label.group_conservation = Group Conservation label.show_consensus_histogram = Show Consensus Histogram +label.show_ssconsensus_histogram = Show SS Consensus Histogram label.show_consensus_logo = Show Consensus Logo +label.show_ssconsensus_logo = Show SS Consensus Logo label.norm_consensus_logo = Normalise Consensus Logo label.apply_all_groups = Apply to all groups label.autocalculated_annotation = Autocalculated Annotation +label.show_secondary_structure = Show Secondary Structure label.show_first = Show first label.show_last = Show last label.struct_from_pdb = Process secondary structure from PDB @@ -309,6 +320,8 @@ label.labels = Labels label.output_values = Output Values... label.output_points = Output points... label.output_transformed_points = Output transformed points +label.output_alignment = Output pairwise alignments +label.pairwise_alignment_for_params = Pairwise alignments for {0} label.input_data = Input Data... label.nucleotide_matrix = Nucleotide matrix label.protein_matrix = Protein matrix @@ -358,6 +371,7 @@ label.sequences_from = Sequences from {0} label.successfully_loaded_file = Successfully loaded file {0} label.successfully_loaded_matrix = Successfully loaded score matrix {0} label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format. +label.successfully_printed_to_stdout_in_format = Successfully printed to STDOUT in {0} format. label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard. label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment. label.problem_reading_tcoffee_score_file = Problem reading T-COFFEE score file @@ -444,6 +458,7 @@ label.input_cut_paste_params = Cut & Paste Input - {0} label.alignment_output_command = Alignment output - {0} label.annotations = Annotations label.structure_options = Structure Options +label.structure_import_options = Structure Import Options label.features = Features label.overview_params = Overview {0} label.paste_newick_file = Paste Newick file @@ -453,6 +468,7 @@ label.selection_output_command = Selection output - {0} label.annotation_for_displayid =

Annotation for {0}

label.pdb_sequence_mapping = PDB - Sequence Mapping label.pca_details = PCA details +label.pasimap_details = PaSiMap details label.redundancy_threshold_selection = Redundancy threshold selection label.user_defined_colours = User defined colours label.jalviewLite_release = JalviewLite - Release {0} @@ -512,6 +528,7 @@ label.delete_gaps = Delete {0} gaps label.sequence_details = Sequence Details label.viewer_help = {0} Help label.close_viewer = Close Viewer +label.close_viewers = Close Viewers label.confirm_close_viewer = This will close Jalview''s connection to {0}.
Do you want to close the {1} window as well? label.all = All label.sort_by = Sort alignment by @@ -547,6 +564,7 @@ label.select_colour_maximum_value = Select Colour for Maximum Value label.open_url_param = Open URL {0} label.open_url_seqs_param = Open URL ({0}..) ({1} seqs) label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0} +label.load_pae_matrix_file_associate_with_structure = Load a PAE matrix file and associate it with structure {0} label.reveal_hidden_columns = Reveal Hidden Columns with Right Mouse Button label.dark_colour = Dark Colour label.light_colour = Light Colour @@ -590,6 +608,7 @@ label.quality = Quality label.maximize_window = Maximize Window label.conservation = Conservation label.consensus = Consensus +label.ssConsensus = Secondary Structure Consensus label.histogram = Histogram label.logo = Logo label.non_positional_features = List Non-positional Features @@ -695,12 +714,13 @@ label.sequence_details_for = Sequence Details for {0} label.sequence_name = Sequence Name label.sequence_description = Sequence Description label.edit_sequence_name_description = Edit Sequence Name/Description -label.spaces_converted_to_underscores = Spaces have been converted to _ +label.spaces_converted_to_underscores = Spaces have been converted to underscores (_) label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name label.select_outline_colour = Select Outline Colour label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences." label.web_browser_not_found = Web browser not found label.select_pdb_file_for = Select a PDB file for {0} +label.select_pae_matrix_file_for = Select a PAE matrix file for {0} label.html = HTML label.wrap = Wrap label.show_database_refs = Show Database Refs @@ -1014,6 +1034,8 @@ label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry label.pca_recalculating = Recalculating PCA label.pca_calculating = Calculating PCA +label.pasimap_recalculating = Recalculating PaSiMap +label.pasimap_calculating = Calculating PaSiMap label.select_foreground_colour = Choose foreground colour label.select_colour_for_text = Select Colour for Text label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold @@ -1236,8 +1258,8 @@ label.mapping_method = Sequence \u27f7 Structure mapping method status.cancelled_image_export_operation = Cancelled {0} export operation info.error_creating_file = Error creating {0} file exception.outofmemory_loading_mmcif_file = Out of memory loading mmCIF File -label.run_groovy = Run Groovy console script -label.run_groovy_tip = Run the script in the Groovy console over this alignment +label.run_groovy = Run Groovy Console Script +label.run_groovy_tip = Run the script in the Groovy Console over this alignment label.couldnt_run_groovy_script = Failed to run Groovy script label.uniprot_sequence_fetcher = UniProt Sequence Fetcher action.next_page= >> @@ -1278,6 +1300,8 @@ label.togglehidden = Show hidden regions label.quality_descr = Alignment Quality based on Blosum62 scores label.conservation_descr = Conservation of total alignment less than {0}% gaps label.consensus_descr = PID +label.ssconsensus_label = Secondary Structure Consensus +label.ssconsensus_descr = SS Consensus label.complement_consensus_descr = PID for cDNA label.strucconsensus_descr = PID for base pairs label.occupancy_descr = Number of aligned positions @@ -1340,6 +1364,7 @@ label.annotation_description = Annotation Description label.edit_annotation_name_description = Edit Annotation Name/Description label.alignment = alignment label.pca = PCA +label.pasimap = PaSiMap label.create_image_of = Create {0} image of {1} label.click_to_edit = Click to edit, right-click for menu label.backupfiles_confirm_delete = Confirm delete @@ -1409,6 +1434,8 @@ label.click_to_edit = Click to edit, right-click for menu label.by_annotation_tooltip = Annotation Colour is configured from the main Colour menu label.show_linked_features = Show {0} features label.on_top = on top +label.include_features = Include Features +label.search_features = Search descriptions of displayed features label.include_linked_features = Include {0} features label.include_linked_tooltip = Include visible {0} features
converted to local sequence coordinates label.features_not_shown = {0} feature(s) not shown @@ -1417,6 +1444,7 @@ label.ignore_hidden = Ignore hidden columns label.ignore_hidden_tooltip = Ignore any characters in hidden columns when matching label.log_level = Log level label.log_level_tooltip = Temporarily set the log level for this console. The log level will revert to {0} when this Java console is closed. +label.copy = Copy label.copy_to_clipboard = Copy to clipboard label.copy_to_clipboard_tooltip = Copy all of the log text in this console to the system clipboard label.startup = Startup @@ -1432,3 +1460,27 @@ label.memory_example_text = Maximum memory that would be used with these setting label.memory_example_tooltip = The memory allocated to Jalview is the smaller of the percentage of physical memory (default 90%) and the maximum absolute memory (default 32GB). If your computer's memory cannot be ascertained then the maximum absolute memory defaults to 8GB (if not customised).
Jalview will always try and reserve 512MB for the OS and at least 512MB for itself. warning.wrong_jvm_version_title = Wrong Java Version warning.wrong_jvm_version_message = The Java version being used (Java {0}) may lead to problems.\nThis installation of Jalview should be used with Java {1}. +label.alphafold_reliability = Alphafold Reliability +label.tftype_default = Default +label.tftype_plddt = pLDDT +label.optional = (optional) +label.choose_tempfac_type = Choose Temperature Factor type +label.interpret_tempfac_as = Interpret Temperature Factor as +label.add_pae_matrix_file = Add PAE matrix file +label.nothing_selected = Nothing selected +prompt.analytics_title = Jalview Usage Statistics +prompt.analytics = Do you want to help make Jalview better by enabling the collection of usage statistics with Plausible analytics?\nYou can enable or disable usage tracking in the preferences. +label.working_ellipsis = Working ... +action.show_groups_on_matrix = Show groups on matrix +action.show_groups_on_matrix_tooltip = When enabled, clusters defined on the matrix's associated tree or below the assigned threshold are shown as different colours on the matrix annotation row +action.show_tree_for_matrix = Show tree for matrix +action.show_tree_for_matrix_tooltip = Opens a tree viewer to display the average distance tree for the matrix +action.cluster_matrix = Cluster matrix +action.clustering_matrix_for = Calculating tree for matrix {0} and clustering at {1} +action.cluster_matrix_tooltip = Computes an average distance tree for the matrix and displays it +label.all_known_alignment_files = All known alignment files +label.command_line_arguments = Command Line Arguments +warning.using_old_command_line_arguments = It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview.\nFind out about the new command line arguments at\n +warning.using_mixed_command_line_arguments = Jalview cannot use both old (-arg) and new (--arg) command line arguments. Please check your command line arguments.\ne.g. {0} and {1} +warning.the_following_errors = The following errors and warnings occurred whilst processing files: +action.show_hetatm = Show Ligands (HETATM)