X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=496fad03915909a448697fed44499aa276db9cfb;hb=af259f508805faf2da90585ee9a67cd7853bf5aa;hp=ecbfb953ed1125914fee0dee95698c3aa3ef3c86;hpb=470b622223b227bdbd4af3151f9d002a95bb1f52;p=jalview.git diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index ecbfb95..496fad0 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -32,6 +32,7 @@ action.load_project = Load Project action.save_project = Save Project action.save_project_as = Save Project as... action.quit = Quit +label.quit_jalview = Quit Jalview? action.expand_views = Expand Views action.gather_views = Gather Views action.page_setup = Page Setup... @@ -119,10 +120,8 @@ action.select = Select action.new_view = New View action.close = Close action.add = Add -action.save_as_default = Save as default action.save_as = Save as... action.save = Save -action.cancel_fetch = Cancel Fetch action.change_font = Change Font action.change_font_tree_panel = Change Font (Tree Panel) action.colour = Colour @@ -133,6 +132,8 @@ tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-( action.deselect_all = Deselect all action.invert_selection = Invert selection action.using_jmol = Using Jmol +action.undo_changes_to_feature_settings = Undo all unapplied changes to feature settings +action.undo_changes_to_feature_settings_and_close_the_dialog = Undo all pending changes and close the feature settings dialog action.link = Link action.group_link = Group Link action.show_chain = Show Chain @@ -141,7 +142,6 @@ action.fetch_db_references = Fetch DB References action.view_flanking_regions = Show flanking regions label.view_flanking_regions = Show sequence data either side of the subsequences involved in this alignment label.structures_manager = Structures Manager -label.nickname = Nickname: label.url = URL label.url\: = URL: label.input_file_url = Enter URL or Input File @@ -163,7 +163,6 @@ label.current_parameter_set_name = Current parameter set name: label.service_action = Service Action: label.post_url = POST URL: label.url_suffix = URL Suffix -label.sequence_source = Sequence Source label.per_seq = per Sequence label.result_vertically_separable = Results are vertically separable label.amend = Amend @@ -188,21 +187,22 @@ label.out_to_textbox = Output to Textbox label.occupancy = Occupancy # delete Clustal - use FileFormat name instead label.clustal = Clustal -# label.colourScheme_ as in JalviewColourScheme +# label.colourScheme_ as in JalviewColourScheme, spaces removed label.colourScheme_clustal = Clustalx label.colourScheme_blosum62 = BLOSUM62 Score -label.colourScheme_%_identity = Percentage Identity +label.colourScheme_%identity = Percentage Identity label.colourScheme_zappo = Zappo label.colourScheme_taylor = Taylor label.colourScheme_hydrophobic = Hydrophobicity -label.colourScheme_helix_propensity = Helix Propensity -label.colourScheme_strand_propensity = Strand Propensity -label.colourScheme_turn_propensity = Turn Propensity -label.colourScheme_buried_index = Buried Index +label.colourScheme_helixpropensity = Helix Propensity +label.colourScheme_strandpropensity = Strand Propensity +label.colourScheme_turnpropensity = Turn Propensity +label.colourScheme_buriedindex = Buried Index label.colourScheme_purine/pyrimidine = Purine/Pyrimidine label.colourScheme_nucleotide = Nucleotide -label.colourScheme_t-coffee_scores = T-Coffee Scores -label.colourScheme_rna_helices = By RNA Helices +label.colourScheme_t-coffeescores = T-Coffee Scores +label.colourScheme_rnahelices = By RNA Helices +label.colourScheme_sequenceid = Sequence ID Colour label.blc = BLC label.fasta = Fasta label.msf = MSF @@ -230,6 +230,7 @@ label.nucleotide = Nucleotide label.protein = Protein label.nucleotides = Nucleotides label.proteins = Proteins +label.CDS = CDS label.to_new_alignment = To New Alignment label.to_this_alignment = Add To This Alignment label.apply_colour_to_all_groups = Apply Colour To All Groups @@ -353,7 +354,6 @@ label.status = Status label.channels = Channels label.channel_title_item_count = {0} ({1}) label.blog_item_published_on_date = {0} {1} -label.select_das_service_from_table = Select a DAS service from the table to read a full description here. label.session_update = Session Update label.new_vamsas_session = New Vamsas Session action.load_vamsas_session = Load Vamsas Session... @@ -371,14 +371,13 @@ label.load_colours = Load Colours label.save_colours = Save Colours label.load_colours_tooltip = Load feature colours and filters from file label.save_colours_tooltip = Save feature colours and filters to file -label.fetch_das_features = Fetch DAS Features label.selected_database_to_fetch_from = Selected {0} database {1} to fetch from {2} label.database_param = Database: {0} label.example = Example label.example_param = Example: {0} label.select_file_format_before_saving = You must select a file format before saving! label.file_format_not_specified = File format not specified -label.couldnt_save_file = Couldn't save file: {0} +label.couldnt_save_file = Couldn''t save file: {0} label.error_saving_file = Error Saving File label.remove_from_default_list = Remove from default list? label.remove_user_defined_colour = Remove user defined colour @@ -407,14 +406,11 @@ label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be label.couldnt_load_file = Couldn't load file label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure. label.no_pdb_id_in_file = No PDB Id in File -label.couldnt_read_pasted_text = Couldn't read the pasted text {0} +label.couldnt_read_pasted_text = Couldn''t read the pasted text {0} label.error_parsing_text = Error parsing text -label.enter_local_das_source = Enter Nickname & URL of Local DAS Source -label.you_can_only_edit_or_remove_local_das_sources = You can only edit or remove local DAS Sources! -label.public_das_source = Public DAS source - not editable label.input_alignment_from_url = Input Alignment From URL label.input_alignment = Input Alignment -label.couldnt_import_as_vamsas_session = Couldn't import {0} as a new vamsas session. +label.couldnt_import_as_vamsas_session = Couldn''t import {0} as a new vamsas session. label.vamsas_document_import_failed = Vamsas Document Import Failed label.couldnt_locate = Could not locate {0} label.url_not_found = URL not found @@ -428,8 +424,6 @@ label.invalid_url = Invalid URL ! label.error_loading_file = Error loading file label.problems_opening_file = Encountered problems opening {0}!! label.file_open_error = File open error -label.no_das_sources_selected_warn = No das sources were selected.\nPlease select some sources and\ntry again. -label.no_das_sources_selected_title = No DAS Sources Selected label.colour_scheme_exists_overwrite = Colour scheme {0} exists.\nContinue saving colour scheme as {1}?" label.duplicate_scheme_name = Duplicate scheme name label.jalview_new_questionnaire = There is a new Questionnaire available. Would you like to complete it now ?\n @@ -626,7 +620,6 @@ label.visual = Visual label.connections = Connections label.output = Output label.editing = Editing -label.das_settings = DAS Settings label.web_services = Web Services label.right_click_to_edit_currently_selected_parameter = Right click to edit currently selected parameter. label.let_jmol_manage_structure_colours = Let Jmol manage structure colours @@ -642,10 +635,6 @@ label.delete_service_url = Delete Service URL label.details = Details label.options = Options label.parameters = Parameters -label.available_das_sources = Available DAS Sources -label.full_details = Full Details -label.authority = Authority -label.type = Type label.proxy_server = Proxy Server label.file_output = File Output label.select_input_type = Select input type @@ -714,9 +703,6 @@ label.sort_alignment_new_tree = Sort Alignment With New Tree label.add_sequences = Add Sequences label.new_window = New Window label.split_window = Split Window -label.refresh_available_sources = Refresh Available Sources -label.use_registry = Use Registry -label.add_local_source = Add Local Source label.set_as_default = Set as Default label.show_labels = Show labels action.background_colour = Background Colour... @@ -775,13 +761,16 @@ label.run_with_preset_params = Run {0} with preset label.view_and_change_parameters_before_running_calculation = View and change parameters before running calculation label.view_documentation = View documentation label.select_return_type = Select return type -label.translation_of_params = Translation of {0} +label.translation_of_params = Translation of {0} (Table {1}) label.features_for_params = Features for - {0} label.annotations_for_params = Annotations for - {0} label.generating_features_for_params = Generating features for - {0} label.generating_annotations_for_params = Generating annotations for - {0} label.varna_params = VARNA - {0} label.sequence_feature_settings = Sequence Feature Settings +label.sequence_feature_settings_for = Sequence Feature Settings for {0} +label.sequence_feature_settings_for_view = Sequence Feature Settings for view "{0}" +label.sequence_feature_settings_for_CDS_and_Protein = Sequence Feature Settings for CDS and Protein label.pairwise_aligned_sequences = Pairwise Aligned Sequences label.original_data_for_params = Original Data for {0} label.points_for_params = Points for {0} @@ -857,7 +846,6 @@ label.multiharmony = Multi-Harmony label.unable_start_web_service_analysis = Unable to start web service analysis label.job_couldnt_be_started_check_input = The Job couldn't be started. Please check your input, and the Jalview console for any warning messages. label.prompt_each_time = Prompt each time -label.use_source = Use Source label.couldnt_save_project = Couldn't save project label.error_whilst_saving_current_state_to = Error whilst saving current state to {0} label.error_whilst_loading_project_from = Error whilst loading project from {0} @@ -867,7 +855,7 @@ label.invalid_name = Invalid name label.set_proxy_settings = Please set up your proxy settings in the 'Connections' tab of the Preferences window label.proxy_authorization_failed = Proxy Authorization Failed label.internal_jalview_error = Internal Jalview Error -label.secondary_structure_prediction_service_couldnt_be_located = The Secondary Structure Prediction Service named {0} at {1} couldn't be located. +label.secondary_structure_prediction_service_couldnt_be_located = The Secondary Structure Prediction Service named {0} at {1} couldn''t be located. label.service_called_is_not_msa_service = The Service called \n{0}\nis not a \nMultiple Sequence Alignment Service\! label.msa_service_is_unknown = The Multiple Sequence Alignment Service named {0} is unknown label.service_called_is_not_seq_search_service = The Service called \n{0}\nis not a \nSequence Search Service\! @@ -997,7 +985,7 @@ error.cannot_set_arguments_to_jabaws_param_set = Cannot set arguments to a JabaW error.implementation_error_runner_config_not_available = Implementation Error: Runner Config not available for a JABAWS service of type {0} ({1}) error.implementation_error_cannot_handle_jaba_param = Implementation Error: Cannot handle Jaba parameter object {0} error.implementation_error_attempt_to_delete_service_preset = Implementation error: Attempt to delete a service preset! -error.implementation_error_cannot_locate_oldname_presetname = Implementation error: Can't locate either oldname ({0}) or presetName ({1}in the datastore!" +error.implementation_error_cannot_locate_oldname_presetname = Implementation error: Can''t locate either oldname ({0}) or presetName ({1}in the datastore!" error.implementation_error_jabaws_param_set_only_handled_by = Implementation error: JabaWsParamSets can only be handled by JabaParamStore error.cannot_set_source_file_for = Cannot set source file for {0} error.mismatch_service_instance_preset = Probable mismatch between service instance and preset! @@ -1005,7 +993,7 @@ error.cannot_set_params_for_ws_preset = Cannot set Parameters for a Jaba Web ser error.implementation_error_can_only_instantiate_jaba_param_sets = Implementation error: Can only instantiate Jaba parameter sets error.no_aacon_service_found = No AACon service found error.implementation_error_couldnt_copy_value_constraint = Implementation error: could not copy ValueConstrain! -error.couldnt_encode_as_utf8 = Couldn't encode {0} as UTF-8. +error.couldnt_encode_as_utf8 = Couldn''t encode {0} as UTF-8. error.tree_inputtype_not_yet_implemented = Tree InputType not yet implemented error.implementation_error_need_to_have_httpresponse = Implementation Error: need to have an HttpResponse to process error.dbrefsource_implementation_exception =DBRefSource Implementation Exception @@ -1016,7 +1004,8 @@ label.toggled = Toggled label.marked = Marked label.containing = containing label.not_containing = not containing -label.no_feature_of_type_found = No features of type {0} found. +label.no_feature_of_type_found = No features of type {0} found +label.no_feature_found_selection = No features of type {0} found in selection label.submission_params = Submission {0} label.empty_alignment_job = Empty Alignment Job label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service @@ -1060,18 +1049,18 @@ error.implementation_error_reset_called_for_invalid_source = Implementation Erro exception.number_of_residues_in_query_sequence_differ_from_prediction = Number of residues in {0} supposed query sequence ({1}\n{2})\ndiffer from number of prediction sites in prediction ({3}) label.mapped = mapped exception.jpredconcide_entry_has_unexpected_number_of_columns = JPredConcise: Entry ({0}) has an unexpected number of columns -exception.couldnt_parse_concise_annotation_for_prediction = Couldn't parse concise annotation for prediction profile.\n{0} +exception.couldnt_parse_concise_annotation_for_prediction = Couldn''t parse concise annotation for prediction profile.\n{0} exception.newfile = NewickFile\: {0}\n label.no_tree_read_in = No Tree read in -exception.rnaml_couldnt_access_datasource = Couldn't access datasource ({0}) -exception.ranml_couldnt_process_data = Couldn't process data as RNAML file ({0}) +exception.rnaml_couldnt_access_datasource = Couldn''t access datasource ({0}) +exception.ranml_couldnt_process_data = Couldn''t process data as RNAML file ({0}) exception.ranml_invalid_file = Invalid RNAML file ({0}) exception.ranml_problem_parsing_data = Problem parsing data as RNAML ({0}) exception.pfam_no_sequences_found = No sequences found (PFAM input) exception.stockholm_invalid_format = This file is not in valid STOCKHOLM format: First line does not contain '# STOCKHOLM' exception.couldnt_parse_sequence_line = Could not parse sequence line: {0} exception.unknown_annotation_detected = Unknown annotation detected: {0} {1} -exception.couldnt_store_sequence_mappings = Couldn't store sequence mappings for {0} +exception.couldnt_store_sequence_mappings = Couldn''t store sequence mappings for {0} exception.matrix_too_many_iteration = Too many iterations in {0} (max is {1}) exception.browser_not_found = Exception in finding browser: {0} exception.browser_unable_to_locate = Unable to locate browser: {0} @@ -1082,9 +1071,6 @@ exception.unable_to_create_internet_config = Unable to create an Internet Config exception.invocation_target_calling_url = InvocationTargetException while calling openURL: {0} exception.illegal_access_calling_url = IllegalAccessException while calling openURL: {0} exception.interrupted_launching_browser = InterruptedException while launching browser: {0} -exception.das_source_doesnt_support_sequence_command = Source {0} does not support the sequence command. -exception.invalid_das_source = Invalid das source: {0} -exception.ebiembl_retrieval_failed_on = EBI EMBL XML retrieval failed on {0}:{1} exception.no_pdb_records_for_chain = No PDB Records for {0} chain {1} exception.unexpected_handling_rnaml_translation_for_pdb = Unexpected exception when handling RNAML translation of PDB data exception.couldnt_recover_sequence_properties_for_alignment = Couldn't recover sequence properties for alignment @@ -1107,7 +1093,7 @@ warn.service_not_supported = Service not supported! warn.input_is_too_big = Input is too big! warn.invalid_job_param_set = Invalid job parameter set! warn.oneseq_msainput_selection = The current selection only contains a single sequence. Do you want to submit all sequences for alignment instead ? -info.job_couldnt_be_run_server_doesnt_support_program = Job could not be run because the server doesn't support this program.\n{0} +info.job_couldnt_be_run_server_doesnt_support_program = Job could not be run because the server doesn''t support this program.\n{0} info.job_couldnt_be_run_exceeded_hard_limit = Job could not be run because it exceeded a hard limit on the server.\n{0} info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service\!\n info.no_jobs_ran = No jobs ran @@ -1138,10 +1124,6 @@ status.parsing_results = Parsing results. status.processing = Processing... status.refreshing_web_service_menus = Refreshing Web Service Menus status.collecting_job_results = Collecting job results. -status.fetching_das_sequence_features = Fetching DAS Sequence Features -status.no_das_sources_active = No DAS Sources Active -status.das_feature_fetching_cancelled = DAS Feature Fetching Cancelled -status.das_feature_fetching_complete = DAS Feature Fetching Complete status.fetching_db_refs = Fetching db refs status.loading_cached_pdb_entries = Loading Cached PDB Entries status.searching_for_pdb_structures = Searching for PDB Structures @@ -1164,8 +1146,6 @@ warn.urls_not_contacted = URLs that could not be contacted warn.urls_no_jaba = URLs without any JABA Services info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results) label.test_server = Test Server? -info.you_want_jalview_to_find_uniprot_accessions = Do you want Jalview to find\nUniprot Accession ids for given sequence names? -label.find_uniprot_accession_ids = Find Uniprot Accession Ids label.new_sequence_fetcher = New Sequence Fetcher label.additional_sequence_fetcher = Additional Sequence Fetcher label.select_database_retrieval_source = Select Database Retrieval Source @@ -1251,9 +1231,6 @@ label.structure_chooser_filter_time = Structure Chooser - Filter time ({0}) label.structure_chooser_no_of_structures = Structure Chooser - {0} Found ({1}) info.no_pdb_entry_found_for = No PDB entry found for {0} exception.unable_to_detect_internet_connection = Jalview is unable to detect an internet connection -exception.fts_rest_service_no_longer_available = {0} rest services no longer available! -exception.resource_not_be_found = The requested resource could not be found -exception.fts_server_error = There seems to be an error from the {0} server exception.fts_server_unreachable = Jalview is unable to reach the {0} server. \nPlease ensure that you are connected to the internet and try again. label.nw_mapping = Needleman & Wunsch Alignment label.sifts_mapping = SIFTs Mapping @@ -1270,8 +1247,6 @@ action.next_page= >> action.prev_page= << label.next_page_tooltip=Next Page label.prev_page_tooltip=Previous Page -exception.bad_request=Bad request. There is a problem with your input. -exception.service_not_available=Service not available. The server is being updated, try again later. status.launching_3d_structure_viewer = Launching 3D Structure viewer... status.fetching_3d_structures_for_selected_entries = Fetching 3D Structures for selected entries... status.fetching_dbrefs_for_sequences_without_valid_refs = Fetching db refs for {0} sequence(s) without valid db ref required for SIFTS mapping @@ -1301,7 +1276,6 @@ label.edit_sequence_url_link = Edit sequence URL link warn.name_cannot_be_duplicate = User-defined URL names must be unique and cannot be MIRIAM ids label.output_seq_details = Output Sequence Details to list all database references label.urllinks = Links -label.default_cache_size = Default Cache Size action.clear_cached_items = Clear Cached Items label.togglehidden = Show hidden regions label.quality_descr = Alignment Quality based on Blosum62 scores @@ -1340,6 +1314,7 @@ label.numeric_required = The value should be numeric label.filter = Filter label.filters = Filters label.join_conditions = Join conditions with +label.delete_condition = Delete this condition label.score = Score label.colour_by_label = Colour by label label.variable_colour = Variable colour... @@ -1370,6 +1345,7 @@ label.backupfiles_confirm_save_file = Confirm save file label.backupfiles_confirm_save_file_backupfiles_roll_wrong = Something possibly went wrong with the backups of this file. label.backupfiles_confirm_save_new_saved_file_ok = The new saved file seems okay. label.backupfiles_confirm_save_new_saved_file_not_ok = The new saved file might not be okay. +label.continue_operation = Continue operation? label.backups = Backups label.backup = Backup label.backup_files = Backup Files @@ -1379,12 +1355,13 @@ label.append_to_filename = Append to filename (%n is replaced by the backup numb label.append_to_filename_tooltip = %n in the text will be replaced by the backup number. The text will appear after the filename. See the summary box above. label.index_digits = Number of digits to use for the backup number (%n) label.summary_of_backups_scheme = Summary of backup scheme +label.scheme_examples = Scheme examples label.increment_index = Increase appended text numbers - newest file has largest number. label.reverse_roll = "Roll" appended text numbers - newest backup file is always number 1. label.keep_files = Deleting old backup files label.keep_all_backup_files = Do not delete old backup files label.keep_only_this_number_of_backup_files = Keep only this number of most recent backup files -label.autodelete_old_backup_files = Autodelete old backup files: +label.autodelete_old_backup_files = Auto-delete old backup files: label.always_ask = Always ask label.auto_delete = Automatically delete label.filename = filename @@ -1394,10 +1371,18 @@ label.configuration = Configuration label.configure_feature_tooltip = Click to configure variable colour or filters label.schemes = Schemes label.customise = Customise +label.custom = Custom label.default = Default label.single_file = Single backup label.keep_all_versions = Keep all versions label.rolled_backups = Rolled backup files +label.customise_description = Select Customise, make changes, and click on OK to save your own custom scheme +label.custom_description = Your own saved scheme +label.default_description = Keep the last three versions of the file +label.single_file_description = Keep the last version of the file +label.keep_all_versions_description = Keep all previous versions of the file +label.rolled_backups_description = Keep the last nine versions of the file from _bak.1 (newest) to _bak.9 (oldest) +label.cancel_changes_description = Cancel changes made to your last saved Custom scheme label.previously_saved_scheme = Previously saved scheme label.no_backup_files = NO BACKUP FILES label.include_backup_files = Include backup files @@ -1420,3 +1405,16 @@ label.alignment = alignment label.pca = PCA label.create_image_of = Create {0} image of {1} label.click_to_edit = Click to edit, right-click for menu +label.by_annotation_tooltip = Annotation Colour is configured from the main Colour menu +label.show_linked_features = Show {0} features +label.on_top = on top +label.include_linked_features = Include {0} features +label.include_linked_tooltip = Include visible {0} features
converted to local sequence coordinates +label.features_not_shown = {0} feature(s) not shown +label.no_features_to_sort_by = No features to sort by +label.log_level = Log level +label.log_level_tooltip = Temporarily set the log level for this console. The log level will revert to {0} when this Java console is closed. +label.copy_to_clipboard = Copy to clipboard +label.copy_to_clipboard_tooltip = Copy all of the log text in this console to the system clipboard +label.ignore_hidden = Ignore hidden columns +label.ignore_hidden_tooltip = Ignore any characters in hidden columns when matching