X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=55d7a904c9f9fa0c9336424b2ebad56ab3bc12c7;hb=02615f4ca92570e571d166aeb8d9c0bf6531424d;hp=0d3d491a0419846902d0e6771d1c3309683bf771;hpb=be32c14cd8e48fe0a207cd7030cb9cd46f894678;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 0d3d491..55d7a90 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -121,7 +121,7 @@ action.save_as_default = Save as default
 action.save_as = Save as
 action.save = Save
 action.cancel_fetch = Cancel Fetch
-action.save_omit_hidden_columns = Save / Omit Hidden Columns
+action.save_omit_hidden_columns = Save / Omit Hidden Regions
 action.change_font = Change Font
 action.change_font_tree_panel = Change Font (Tree Panel)
 action.colour = Colour
@@ -258,6 +258,7 @@ label.chimera_path = Path to Chimera program
 label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.<br>Double-click to browse for file.
 label.invalid_chimera_path = Chimera path not found or not executable
 label.chimera_missing = Chimera structure viewer not found.<br/>Please enter the path to Chimera (if installed),<br/>or download and install UCSF Chimera.
+label.chimera_failed = Error opening Chimera - is it installed?\nCheck path in Preferences, Structure
 label.min_colour = Minimum Colour
 label.max_colour = Maximum Colour
 label.use_original_colours = Use Original Colours
@@ -361,7 +362,7 @@ label.example = Example
 label.example_param = Example: {0}
 label.select_file_format_before_saving = You must select a file format before saving!
 label.file_format_not_specified = File format not specified
-label.alignment_contains_hidden_columns = The Alignment contains hidden columns.\nDo you want to save only the visible alignment?
+label.alignment_contains_hidden_columns = The Alignment contains hidden regions (hidden sequences/columns).\nDo you want to save only the visible alignment?
 label.couldnt_save_file = Couldn't save file: {0}
 label.error_saving_file = Error Saving File
 label.remove_from_default_list = Remove from default list?
@@ -534,7 +535,10 @@ label.dark_colour = Dark Colour
 label.light_colour = Light Colour
 label.highlightnode = Left click to select leaves.<br>Double-click to invert leaves.<br>Right click to change colour.
 label.load_colour_scheme = Load colour scheme
+label.copy_format_from = Copy format from
 label.toggle_enabled_views = When enabled, allows many views to be selected.
+label.select_all_views = Select all views
+label.select_many_views = Select many views
 label.edit_notes_parameter_set = Click to edit the notes for this parameter set.
 label.open_local_file = Open local file
 label.enable_automatically_sort_alignment_when_open_new_tree = Enable this to automatically sort<br>the alignment when you open<br> a new tree.
@@ -574,8 +578,8 @@ label.conservation = Conservation
 label.consensus = Consensus
 label.histogram = Histogram
 label.logo = Logo
-label.non_positional_features = Non-positional Features
-label.database_references = Database References
+label.non_positional_features = List Non-positional Features
+label.database_references = List Database References
 label.share_selection_across_views = Share selection across views
 label.scroll_highlighted_regions = Scroll to highlighted regions
 label.gap_symbol = Gap Symbol
@@ -601,7 +605,7 @@ label.figure_id_column_width = Figure ID column width
 label.use_modeller_output = Use Modeller Output
 label.wrap_alignment = Wrap Alignment
 label.right_align_ids = Right Align Ids
-label.sequence_name_italics = Sequence Name Italics
+label.sequence_name_italics = Italic Sequence Ids
 label.open_overview = Open Overview
 label.default_colour_scheme_for_alignment = Default Colour Scheme for alignment
 label.annotation_shading_default = Annotation Shading Default
@@ -658,7 +662,7 @@ label.cancel_job_close_dialog = Close this dialog and cancel job
 label.input_output = Input/Output
 label.cut_paste = Cut'n'Paste
 label.adjusting_parameters_for_calculation = Adjusting parameters for existing Calculation
-label.2d_rna_structure_line = 2D RNA {0}
+label.2d_rna_structure_line = 2D RNA {0} (alignment)
 label.2d_rna_sequence_name = 2D RNA - {0}
 label.edit_name_and_description_current_group = Edit name and description of current group.
 label.view_structure_for = View structure for {0}
@@ -672,6 +676,9 @@ label.discover_pdb_ids = Discover PDB ids
 label.text_colour = Text Colour
 label.structure = Structure
 label.view_structure = View Structure
+label.view_protein_structure = View Protein Structure
+label.show_pdbstruct_dialog = 3D Structure Data ...
+label.view_rna_structure = VARNA 2D Structure
 label.clustalx_colours = Clustalx colours
 label.above_identity_percentage = Above % Identity
 label.create_sequence_details_report_annotation_for = Annotation for {0}
@@ -697,7 +704,7 @@ label.translate_cDNA = Translate as cDNA
 label.linked_view_title = Linked cDNA and protein view
 label.align = Align
 label.extract_scores = Extract Scores
-label.get_cross_refs = Get Cross References
+label.get_cross_refs = Get Cross-References
 label.sort_alignment_new_tree = Sort Alignment With New Tree
 label.add_sequences = Add Sequences
 label.new_window = New Window
@@ -740,7 +747,6 @@ label.fetch_all_param = Fetch all {0}
 label.paste_new_window = Paste To New Window
 label.settings_for_param = Settings for {0}
 label.view_params = View {0}
-label.select_all_views = Select all views
 label.all_views = All Views
 label.align_sequences_to_existing_alignment = Align sequences to an existing alignment
 label.realign_with_params = Realign with {0}
@@ -766,7 +772,9 @@ label.transformed_points_for_params = Transformed points for {0}
 label.graduated_color_for_params = Graduated Feature Colour for {0}
 label.select_backgroud_colour = Select Background Colour
 label.invalid_font = Invalid Font
-label.separate_multiple_accession_ids = Separate multiple accession ids with semi colon ";"
+label.separate_multiple_accession_ids = Enter one or more PDB accession IDs separated by a semi-colon ";"
+label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";"
+label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This Searches the entire PDB database)
 label.replace_commas_semicolons = Replace commas with semi-colons
 label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0}
 label.parsing_failed_unrecoverable_exception_thrown_param = \nParsing failed. An unrecoverable exception was thrown\:\n {0}
@@ -1141,7 +1149,12 @@ status.no_das_sources_active = No DAS Sources Active
 status.das_feature_fetching_cancelled = DAS Feature Fetching Cancelled
 status.das_feature_fetching_complete = DAS Feature Fetching Complete
 status.fetching_db_refs = Fetching db refs
+status.loading_cached_pdb_entries = Loading Cached PDB Entries
+status.searching_for_pdb_structures = Searching for PDB Structures
+status.opening_file = opening file
+status.colouring_chimera = Colouring Chimera
 label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data
+label.font_too_small = Font size is too small
 label.error_loading_file_params = Error loading file {0}
 label.error_loading_jalview_file = Error loading Jalview file
 warn.out_of_memory_when_action = Out of memory when {0}\!\!\nSee help files for increasing Java Virtual Machine memory.
@@ -1183,7 +1196,7 @@ label.normalise_group_logo = Normalise Group Logo
 label.show_histogram = Show Histogram
 label.show_logo = Show Logo
 label.normalise_logo = Normalise Logo
-label.no_colour_selection_in_scheme = Please, make a colour selection before to apply colour scheme
+label.no_colour_selection_in_scheme = Please make a colour selection before applying colour scheme
 label.no_colour_selection_warn = Error saving colour scheme
 label.open_split_window? = Would you like to open as a split window, with cDNA and protein linked?
 label.open_split_window = Open split window
@@ -1192,8 +1205,8 @@ label.mapping_failed = No sequence mapping could be made between the alignments.
 action.no = No
 action.yes = Yes
 label.for = for
-label.select_by_annotation = Select By Annotation
-action.select_by_annotation = Select by Annotation...
+label.select_by_annotation = Select/Hide Columns by Annotation
+action.select_by_annotation = Select/Hide Columns by Annotation...
 label.threshold_filter =  Threshold Filter
 action.hide = Hide
 action.select = Select
@@ -1203,7 +1216,6 @@ label.turn = Turn
 label.select_all = Select All
 label.structures_filter = Structures Filter
 label.search_filter = Search Filter
-label.display_name = Display Label
 label.description = Description
 label.include_description= Include Description
 action.back = Back
@@ -1225,3 +1237,31 @@ label.found_structures_summary = Found Structures Summary
 label.configure_displayed_columns = Configure Displayed Columns
 label.start_jalview = Start Jalview
 label.biojs_html_export = BioJS
+label.scale_as_cdna = Scale protein residues to codons
+label.scale_protein_to_cdna = Scale Protein to cDNA
+label.scale_protein_to_cdna_tip = Make protein residues same width as codons in split frame views
+info.select_annotation_row = Select Annotation Row
+info.enter_search_text_here = Enter Search Text Here
+info.enter_search_text_to_enable = Enter Search Text to Enable
+info.search_in_annotation_label = Search in {0} Label
+info.search_in_annotation_description = Search in {0} Description
+info.change_threshold_mode_to_enable = Change Threshold Mode to Enable
+label.couldnt_read_data = Couldn't read data
+label.embbed_biojson = Embed BioJSON to HTML export
+action.export_groups = Export Groups
+action.export_annotations = Export Annotations
+action.export_hidden_columns = Export Hidden Columns
+action.export_hidden_sequences = Export Hidden Sequences
+action.export_features = Export Features
+label.export_settings = Export Settings
+label.save_as_biojs_html = Save as BioJs HTML
+label.pdb_web-service_error = PDB Web-service Error
+label.structure_chooser_manual_association = Structure Chooser - Manual association
+label.structure_chooser_filter_time = Structure Chooser - Filter time ({0})
+label.structure_chooser_no_of_structures = Structure Chooser - {0} Found ({1})
+info.no_pdb_entry_found_for = No PDB entry found for {0}
+exception.unable_to_detect_internet_connection = Jalview is unable to detect an internet connection
+exception.pdb_rest_service_no_longer_available = PDB rest services no longer available!
+exception.resource_not_be_found = The requested resource could not be found
+exception.pdb_server_error = There seems to be an error from the PDB server
+exception.pdb_server_unreachable = Jalview is unable to reach the PDBe Solr server. \nPlease ensure that you are connected to the internet and try again.