X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=55d7a904c9f9fa0c9336424b2ebad56ab3bc12c7;hb=02615f4ca92570e571d166aeb8d9c0bf6531424d;hp=57bcd5fd623f77a88cfcc88c578b2d13c2cfc9f2;hpb=c03d2649512cdc491a46dda1d1370273241b5253;p=jalview.git diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index 57bcd5f..55d7a90 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -57,8 +57,10 @@ action.by_pairwise_id = by Pairwise Identity action.by_id = by Id action.by_length = by Length action.by_group = by Group +action.unmark_as_reference = Unmark as Reference +action.set_as_reference = Set as Reference action.remove = Remove -action.remove_redundancy = Remove Redundancy +action.remove_redundancy = Remove Redundancy... action.pairwise_alignment = Pairwise Alignments... action.by_rna_helixes = by RNA Helices action.user_defined = User Defined... @@ -119,7 +121,7 @@ action.save_as_default = Save as default action.save_as = Save as action.save = Save action.cancel_fetch = Cancel Fetch -action.save_omit_hidden_columns = Save / Omit Hidden Columns +action.save_omit_hidden_columns = Save / Omit Hidden Regions action.change_font = Change Font action.change_font_tree_panel = Change Font (Tree Panel) action.colour = Colour @@ -214,6 +216,7 @@ label.none = None label.above_identity_threshold = Above Identity Threshold label.show_sequence_features = Show Sequence Features label.nucleotide = Nucleotide +label.protein = Protein label.to_new_alignment = To New Alignment label.to_this_alignment = Add To This Alignment label.apply_colour_to_all_groups = Apply Colour To All Groups @@ -226,14 +229,17 @@ label.documentation = Documentation label.about = About... label.show_sequence_limits = Show Sequence Limits label.feature_settings = Feature Settings... -label.sequence_features = Sequence Features label.all_columns = All Columns label.all_sequences = All Sequences label.selected_columns = Selected Columns label.selected_sequences = Selected Sequences +label.except_selected_sequences = All except selected sequences label.all_but_selected_region = All but Selected Region (Shift+Ctrl+H) label.selected_region = Selected Region label.all_sequences_columns = All Sequences and Columns +label.hide_insertions = Hide columns gapped for selection +label.hide_selected_annotations = Hide selected annotations +label.show_selected_annotations = Show selected annotations label.group_consensus = Group Consensus label.group_conservation = Group Conservation label.show_consensus_histogram = Show Consensus Histogram @@ -252,6 +258,7 @@ label.chimera_path = Path to Chimera program label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.
Double-click to browse for file. label.invalid_chimera_path = Chimera path not found or not executable label.chimera_missing = Chimera structure viewer not found.
Please enter the path to Chimera (if installed),
or download and install UCSF Chimera. +label.chimera_failed = Error opening Chimera - is it installed?\nCheck path in Preferences, Structure label.min_colour = Minimum Colour label.max_colour = Maximum Colour label.use_original_colours = Use Original Colours @@ -355,7 +362,7 @@ label.example = Example label.example_param = Example: {0} label.select_file_format_before_saving = You must select a file format before saving! label.file_format_not_specified = File format not specified -label.alignment_contains_hidden_columns = The Alignment contains hidden columns.\nDo you want to save only the visible alignment? +label.alignment_contains_hidden_columns = The Alignment contains hidden regions (hidden sequences/columns).\nDo you want to save only the visible alignment? label.couldnt_save_file = Couldn't save file: {0} label.error_saving_file = Error Saving File label.remove_from_default_list = Remove from default list? @@ -380,6 +387,7 @@ label.automatically_associate_pdb_files_with_sequences_same_name = Do you want t label.automatically_associate_pdb_files_by_name = Automatically Associate PDB files by name label.ignore_unmatched_dropped_files_info = Do you want to ignore the {0} files whose names did not match any sequence IDs ? label.ignore_unmatched_dropped_files = Ignore unmatched dropped files? +label.view_name_original = Original label.enter_view_name = Enter View Name label.enter_label = Enter label label.enter_label_for_the_structure = Enter a label for the structure? @@ -476,10 +484,8 @@ label.settings_for_type = Settings for {0} label.view_full_application = View in Full Application label.load_associated_tree = Load Associated Tree ... label.load_features_annotations = Load Features/Annotations ... -label.export_features = Export Features -label.export_annotations = Export Annotations -label.jalview_copy = Copy (Jalview Only) -label.jalview_cut = Cut (Jalview Only) +label.export_features = Export Features ... +label.export_annotations = Export Annotations ... label.to_upper_case = To Upper Case label.to_lower_case = To Lower Case label.toggle_case = Toggle Case @@ -529,7 +535,10 @@ label.dark_colour = Dark Colour label.light_colour = Light Colour label.highlightnode = Left click to select leaves.
Double-click to invert leaves.
Right click to change colour. label.load_colour_scheme = Load colour scheme +label.copy_format_from = Copy format from label.toggle_enabled_views = When enabled, allows many views to be selected. +label.select_all_views = Select all views +label.select_many_views = Select many views label.edit_notes_parameter_set = Click to edit the notes for this parameter set. label.open_local_file = Open local file label.enable_automatically_sort_alignment_when_open_new_tree = Enable this to automatically sort
the alignment when you open
a new tree. @@ -569,12 +578,13 @@ label.conservation = Conservation label.consensus = Consensus label.histogram = Histogram label.logo = Logo -label.non_positional_features = Non-positional Features -label.database_references = Database References +label.non_positional_features = List Non-positional Features +label.database_references = List Database References label.share_selection_across_views = Share selection across views label.scroll_highlighted_regions = Scroll to highlighted regions label.gap_symbol = Gap Symbol -label.alignment_colour = Alignment Colour +label.prot_alignment_colour = Protein Alignment Colour +label.nuc_alignment_colour = Nucleotide Alignment Colour label.address = Address label.port = Port label.default_browser_unix = Default Browser (Unix) @@ -595,7 +605,7 @@ label.figure_id_column_width = Figure ID column width label.use_modeller_output = Use Modeller Output label.wrap_alignment = Wrap Alignment label.right_align_ids = Right Align Ids -label.sequence_name_italics = Seq Name Italics +label.sequence_name_italics = Italic Sequence Ids label.open_overview = Open Overview label.default_colour_scheme_for_alignment = Default Colour Scheme for alignment label.annotation_shading_default = Annotation Shading Default @@ -652,7 +662,7 @@ label.cancel_job_close_dialog = Close this dialog and cancel job label.input_output = Input/Output label.cut_paste = Cut'n'Paste label.adjusting_parameters_for_calculation = Adjusting parameters for existing Calculation -label.2d_rna_structure_line = 2D RNA {0} +label.2d_rna_structure_line = 2D RNA {0} (alignment) label.2d_rna_sequence_name = 2D RNA - {0} label.edit_name_and_description_current_group = Edit name and description of current group. label.view_structure_for = View structure for {0} @@ -666,10 +676,13 @@ label.discover_pdb_ids = Discover PDB ids label.text_colour = Text Colour label.structure = Structure label.view_structure = View Structure +label.view_protein_structure = View Protein Structure +label.show_pdbstruct_dialog = 3D Structure Data ... +label.view_rna_structure = VARNA 2D Structure label.clustalx_colours = Clustalx colours label.above_identity_percentage = Above % Identity label.create_sequence_details_report_annotation_for = Annotation for {0} -label.sequece_details_for = Sequece Details for {0} +label.sequence_details_for = Sequence Details for {0} label.sequence_name = Sequence Name label.sequence_description = Sequence Description label.edit_sequence_name_description = Edit Sequence Name/Description @@ -687,12 +700,15 @@ label.save_png_image = Save As PNG Image label.load_tree_for_sequence_set = Load a tree for this sequence set label.export_image = Export Image label.vamsas_store = VAMSAS store -label.translate_cDNA = Translate cDNA +label.translate_cDNA = Translate as cDNA +label.linked_view_title = Linked cDNA and protein view +label.align = Align label.extract_scores = Extract Scores -label.get_cross_refs = Get Cross References +label.get_cross_refs = Get Cross-References label.sort_alignment_new_tree = Sort Alignment With New Tree label.add_sequences = Add Sequences label.new_window = New Window +label.split_window = Split Window label.refresh_available_sources = Refresh Available Sources label.use_registry = Use Registry label.add_local_source = Add Local Source @@ -731,7 +747,7 @@ label.fetch_all_param = Fetch all {0} label.paste_new_window = Paste To New Window label.settings_for_param = Settings for {0} label.view_params = View {0} -label.select_all_views = Select all views +label.all_views = All Views label.align_sequences_to_existing_alignment = Align sequences to an existing alignment label.realign_with_params = Realign with {0} label.calcname_with_default_settings = {0} with Defaults @@ -756,7 +772,9 @@ label.transformed_points_for_params = Transformed points for {0} label.graduated_color_for_params = Graduated Feature Colour for {0} label.select_backgroud_colour = Select Background Colour label.invalid_font = Invalid Font -label.separate_multiple_accession_ids = Separate multiple accession ids with semi colon ";" +label.separate_multiple_accession_ids = Enter one or more PDB accession IDs separated by a semi-colon ";" +label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";" +label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This Searches the entire PDB database) label.replace_commas_semicolons = Replace commas with semi-colons label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0} label.parsing_failed_unrecoverable_exception_thrown_param = \nParsing failed. An unrecoverable exception was thrown\:\n {0} @@ -773,7 +791,6 @@ label.use_sequence_id_1 = Use $SEQUENCE_ID$ or $SEQUENCE_ID=//=$ label.use_sequence_id_2 = \nto embed sequence id in URL label.ws_parameters_for = Parameters for {0} label.switch_server = Switch server -label.open_jabaws_web_page = Opens the JABAWS server's homepage in web browser label.choose_jabaws_server = Choose a server for running this service label.services_at = Services at {0} label.rest_client_submit = {0} using {1} @@ -1132,7 +1149,12 @@ status.no_das_sources_active = No DAS Sources Active status.das_feature_fetching_cancelled = DAS Feature Fetching Cancelled status.das_feature_fetching_complete = DAS Feature Fetching Complete status.fetching_db_refs = Fetching db refs +status.loading_cached_pdb_entries = Loading Cached PDB Entries +status.searching_for_pdb_structures = Searching for PDB Structures +status.opening_file = opening file +status.colouring_chimera = Colouring Chimera label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data +label.font_too_small = Font size is too small label.error_loading_file_params = Error loading file {0} label.error_loading_jalview_file = Error loading Jalview file warn.out_of_memory_when_action = Out of memory when {0}\!\!\nSee help files for increasing Java Virtual Machine memory. @@ -1174,7 +1196,72 @@ label.normalise_group_logo = Normalise Group Logo label.show_histogram = Show Histogram label.show_logo = Show Logo label.normalise_logo = Normalise Logo -label.no_colour_selection_in_scheme = Please, make a colour selection before to apply colour scheme +label.no_colour_selection_in_scheme = Please make a colour selection before applying colour scheme label.no_colour_selection_warn = Error saving colour scheme -label.select_by_annotation = Select By Annotation -action.select_by_annotation = Select by annotation... +label.open_split_window? = Would you like to open as a split window, with cDNA and protein linked? +label.open_split_window = Open split window +label.no_mappings = No mappings found +label.mapping_failed = No sequence mapping could be made between the alignments.
A mapping requires sequence names to match, and equivalent sequence lengths. +action.no = No +action.yes = Yes +label.for = for +label.select_by_annotation = Select/Hide Columns by Annotation +action.select_by_annotation = Select/Hide Columns by Annotation... +label.threshold_filter = Threshold Filter +action.hide = Hide +action.select = Select +label.alpha_helix = Alpha Helix +label.beta_strand = Beta Strand +label.turn = Turn +label.select_all = Select All +label.structures_filter = Structures Filter +label.search_filter = Search Filter +label.description = Description +label.include_description= Include Description +action.back = Back +label.hide_insertions = Hide Insertions +label.mark_as_representative = Mark as representative +label.open_jabaws_web_page = Open JABAWS web page +label.opens_the_jabaws_server_homepage = Opens the JABAWS server's homepage in web browser +label.pdb_sequence_getcher = PDB Sequence Fetcher +label.result = result +label.results = results +label.structure_chooser = Structure Chooser +label.select = Select : +label.invert = Invert +label.select_pdb_file = Select PDB File +info.select_filter_option = Select Filter Option/Manual Entry +info.associate_wit_sequence = Associate with Sequence +label.search_result = Search Result +label.found_structures_summary = Found Structures Summary +label.configure_displayed_columns = Configure Displayed Columns +label.start_jalview = Start Jalview +label.biojs_html_export = BioJS +label.scale_as_cdna = Scale protein residues to codons +label.scale_protein_to_cdna = Scale Protein to cDNA +label.scale_protein_to_cdna_tip = Make protein residues same width as codons in split frame views +info.select_annotation_row = Select Annotation Row +info.enter_search_text_here = Enter Search Text Here +info.enter_search_text_to_enable = Enter Search Text to Enable +info.search_in_annotation_label = Search in {0} Label +info.search_in_annotation_description = Search in {0} Description +info.change_threshold_mode_to_enable = Change Threshold Mode to Enable +label.couldnt_read_data = Couldn't read data +label.embbed_biojson = Embed BioJSON to HTML export +action.export_groups = Export Groups +action.export_annotations = Export Annotations +action.export_hidden_columns = Export Hidden Columns +action.export_hidden_sequences = Export Hidden Sequences +action.export_features = Export Features +label.export_settings = Export Settings +label.save_as_biojs_html = Save as BioJs HTML +label.pdb_web-service_error = PDB Web-service Error +label.structure_chooser_manual_association = Structure Chooser - Manual association +label.structure_chooser_filter_time = Structure Chooser - Filter time ({0}) +label.structure_chooser_no_of_structures = Structure Chooser - {0} Found ({1}) +info.no_pdb_entry_found_for = No PDB entry found for {0} +exception.unable_to_detect_internet_connection = Jalview is unable to detect an internet connection +exception.pdb_rest_service_no_longer_available = PDB rest services no longer available! +exception.resource_not_be_found = The requested resource could not be found +exception.pdb_server_error = There seems to be an error from the PDB server +exception.pdb_server_unreachable = Jalview is unable to reach the PDBe Solr server. \nPlease ensure that you are connected to the internet and try again.