X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=614af4625e4adfe44209076b9d864fe228f41ec4;hb=407387056950213aa8a06321ad05a90bbe1e460b;hp=271454a2dee4a55b9b2e6fe24ebca82364214c21;hpb=a5d05d981da8510d2fc2e02aec0b110d6f5dc47e;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 271454a..614af46 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -96,7 +96,7 @@ action.scale_right = Scale Right
 action.by_tree_order = By Tree Order
 action.sort = Sort
 action.calculate_tree = Calculate Tree...
-action.calculate_tree_pca = Calculate Tree or PCA...
+action.calculate_tree_pca = Calculate Tree, PCA or PaSiMap...
 action.help = Help
 action.by_annotation = By Annotation...
 action.invert_sequence_selection = Invert Sequence Selection
@@ -185,6 +185,7 @@ label.amend = Amend
 label.undo_command = Undo {0}
 label.redo_command = Redo {0}
 label.principal_component_analysis = Principal Component Analysis
+label.pasimap = PaSiMap
 label.average_distance_identity = Average Distance Using % Identity
 label.neighbour_joining_identity = Neighbour Joining Using % Identity
 label.choose_calculation = Choose Calculation
@@ -220,10 +221,10 @@ label.colourScheme_nucleotideambiguity = Nucleotide Ambiguity
 label.colourScheme_t-coffeescores = T-Coffee Scores
 label.colourScheme_rnahelices = By RNA Helices
 label.colourScheme_sequenceid = Sequence ID Colour
-label.colourScheme_gecos\:flower = gecos Flower
-label.colourScheme_gecos\:blossom = gecos Blossom
-label.colourScheme_gecos\:sunset = gecos Sunset
-label.colourScheme_gecos\:ocean = gecos Ocean
+label.colourScheme_gecos-flower = gecos Flower
+label.colourScheme_gecos-blossom = gecos Blossom
+label.colourScheme_gecos-sunset = gecos Sunset
+label.colourScheme_gecos-ocean = gecos Ocean
 label.blc = BLC
 label.fasta = Fasta
 label.msf = MSF
@@ -449,6 +450,7 @@ label.input_cut_paste_params = Cut & Paste Input - {0}
 label.alignment_output_command = Alignment output - {0}
 label.annotations = Annotations
 label.structure_options = Structure Options
+label.structure_import_options = Structure Import Options
 label.features = Features
 label.overview_params = Overview {0}
 label.paste_newick_file = Paste Newick file
@@ -458,6 +460,7 @@ label.selection_output_command = Selection output - {0}
 label.annotation_for_displayid = <p><h2>Annotation for {0} </h2></p><p>
 label.pdb_sequence_mapping = PDB - Sequence Mapping
 label.pca_details = PCA details
+label.pasimap_details = PaSiMap details
 label.redundancy_threshold_selection = Redundancy threshold selection
 label.user_defined_colours = User defined colours
 label.jalviewLite_release = JalviewLite - Release {0}
@@ -702,7 +705,7 @@ label.sequence_details_for = Sequence Details for {0}
 label.sequence_name = Sequence Name
 label.sequence_description = Sequence Description
 label.edit_sequence_name_description = Edit Sequence Name/Description
-label.spaces_converted_to_underscores = Spaces have been converted to _
+label.spaces_converted_to_underscores = Spaces have been converted to underscores (_)
 label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name
 label.select_outline_colour = Select Outline Colour
 label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences."
@@ -1022,6 +1025,8 @@ label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service
 label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry
 label.pca_recalculating = Recalculating PCA
 label.pca_calculating = Calculating PCA
+label.pasimap_recalculating = Recalculating PaSiMap
+label.pasimap_calculating = Calculating PaSiMap
 label.select_foreground_colour = Choose foreground colour
 label.select_colour_for_text = Select Colour for Text
 label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold
@@ -1348,6 +1353,7 @@ label.annotation_description = Annotation Description
 label.edit_annotation_name_description = Edit Annotation Name/Description
 label.alignment = alignment
 label.pca = PCA
+label.pasimap = PaSiMap
 label.create_image_of = Create {0} image of {1}
 label.click_to_edit = Click to edit, right-click for menu
 label.backupfiles_confirm_delete = Confirm delete
@@ -1448,5 +1454,17 @@ label.tftype_default = Default
 label.tftype_plddt = pLDDT
 label.optional = (optional)
 label.choose_tempfac_type = Choose Temperature Factor type
+label.interpret_tempfac_as = Interpret Temperature Factor as
 label.add_pae_matrix_file = Add PAE matrix file
 label.nothing_selected = Nothing selected
+prompt.analytics_title = Jalview Usage Statistics
+prompt.analytics = Do you want to help make Jalview better by enabling the collection of usage statistics with Plausible analytics?\nYou can enable or disable usage tracking in the preferences.
+label.working_ellipsis = Working ... 
+action.show_groups_on_matrix = Show groups on matrix
+action.show_groups_on_matrix_tooltip = When enabled, clusters defined on the matrix's associated tree or below the assigned threshold are shown as different colours on the matrix annotation row
+action.show_tree_for_matrix = Show tree for matrix
+action.show_tree_for_matrix_tooltip = Opens a tree viewer to display the average distance tree for the matrix
+action.cluster_matrix = Cluster matrix
+action.clustering_matrix_for = Calculating tree for matrix {0} and clustering at {1}
+action.cluster_matrix_tooltip = Computes an average distance tree for the matrix and displays it
+