X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=614af4625e4adfe44209076b9d864fe228f41ec4;hb=407387056950213aa8a06321ad05a90bbe1e460b;hp=aed11257de316765496fa0d392cde0dbd02c061e;hpb=229c987fa6b3d5b98471ce0d4e83fbbf957e792b;p=jalview.git
diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index aed1125..614af46 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -32,7 +32,20 @@ action.load_project = Load Project
action.save_project = Save Project
action.save_project_as = Save Project as...
action.quit = Quit
-label.quit_jalview = Quit Jalview?
+action.force_quit = Force quit
+label.quit_jalview = Are you sure you want to quit Jalview?
+label.wait_for_save = Wait for save
+label.unsaved_changes = There are unsaved changes.
+label.unsaved_alignments = There are unsaved alignments.
+label.save_in_progress = Some files are still saving:
+label.confirm_quit_viewer = An external viewer is still open. Close the external window as well?
+label.confirm_quit_viewers = External viewers are still open. Close these external windows as well?
+label.unknown = Unknown
+label.quit_after_saving = Jalview will quit after saving.
+label.all_saved = All files saved.
+label.quitting_bye = Quitting, bye!
+action.wait = Wait
+action.cancel_quit = Cancel quit
action.expand_views = Expand Views
action.gather_views = Gather Views
action.page_setup = Page Setup...
@@ -83,7 +96,7 @@ action.scale_right = Scale Right
action.by_tree_order = By Tree Order
action.sort = Sort
action.calculate_tree = Calculate Tree...
-action.calculate_tree_pca = Calculate Tree or PCA...
+action.calculate_tree_pca = Calculate Tree, PCA or PaSiMap...
action.help = Help
action.by_annotation = By Annotation...
action.invert_sequence_selection = Invert Sequence Selection
@@ -130,6 +143,8 @@ action.calculate = Calculate
action.select_all = Select all
action.select_highlighted_columns = Select Highlighted Columns
tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns
+action.copy_highlighted_regions = Copy Highlighted Regions
+tooltip.copy_highlighted_regions = Copies highlighted sequence regions to the clipboard for export or further analysis
action.deselect_all = Deselect all
action.invert_selection = Invert selection
action.using_jmol = Using Jmol
@@ -170,6 +185,7 @@ label.amend = Amend
label.undo_command = Undo {0}
label.redo_command = Redo {0}
label.principal_component_analysis = Principal Component Analysis
+label.pasimap = PaSiMap
label.average_distance_identity = Average Distance Using % Identity
label.neighbour_joining_identity = Neighbour Joining Using % Identity
label.choose_calculation = Choose Calculation
@@ -189,7 +205,7 @@ label.occupancy = Occupancy
# delete Clustal - use FileFormat name instead
label.clustal = Clustal
# label.colourScheme_Annotation for {0}
label.pdb_sequence_mapping = PDB - Sequence Mapping
label.pca_details = PCA details
+label.pasimap_details = PaSiMap details
label.redundancy_threshold_selection = Redundancy threshold selection
label.user_defined_colours = User defined colours
label.jalviewLite_release = JalviewLite - Release {0}
@@ -497,6 +520,7 @@ label.delete_gaps = Delete {0} gaps
label.sequence_details = Sequence Details
label.viewer_help = {0} Help
label.close_viewer = Close Viewer
+label.close_viewers = Close Viewers
label.confirm_close_viewer = This will close Jalview''s connection to {0}.
Do you want to close the {1} window as well?
label.all = All
label.sort_by = Sort alignment by
@@ -518,7 +542,7 @@ label.search_3dbeacons = Search 3D-Beacons
label.find_models_from_3dbeacons = Search 3D-Beacons for 3D structures and models
label.3dbeacons = 3D-Beacons
label.fetch_references_for = Fetch database references for {0} sequences ?
-label.fetch_references_for_3dbeacons = 3D Beacons needs Uniprot References. Fetch database references for {0} sequences ?
+label.fetch_references_for_3dbeacons = 3D Beacons needs to fetch Uniprot References for {0} sequences. Do you want to continue ?
label.reset_min_max_colours_to_defaults = Reset min and max colours to defaults from user preferences.
label.align_structures_using_linked_alignment_views = Superpose structures using {0} selected alignment view(s)
label.threshold_feature_display_by_score = Threshold the feature display by score.
@@ -532,6 +556,7 @@ label.select_colour_maximum_value = Select Colour for Maximum Value
label.open_url_param = Open URL {0}
label.open_url_seqs_param = Open URL ({0}..) ({1} seqs)
label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0}
+label.load_pae_matrix_file_associate_with_structure = Load a PAE matrix file and associate it with structure {0}
label.reveal_hidden_columns = Reveal Hidden Columns with Right Mouse Button
label.dark_colour = Dark Colour
label.light_colour = Light Colour
@@ -680,12 +705,13 @@ label.sequence_details_for = Sequence Details for {0}
label.sequence_name = Sequence Name
label.sequence_description = Sequence Description
label.edit_sequence_name_description = Edit Sequence Name/Description
-label.spaces_converted_to_underscores = Spaces have been converted to _
+label.spaces_converted_to_underscores = Spaces have been converted to underscores (_)
label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name
label.select_outline_colour = Select Outline Colour
label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences."
label.web_browser_not_found = Web browser not found
label.select_pdb_file_for = Select a PDB file for {0}
+label.select_pae_matrix_file_for = Select a PAE matrix file for {0}
label.html = HTML
label.wrap = Wrap
label.show_database_refs = Show Database Refs
@@ -778,8 +804,10 @@ label.transformed_points_for_params = Transformed points for {0}
label.variable_color_for = Variable Feature Colour for {0}
label.select_background_colour = Select Background Colour
label.invalid_font = Invalid Font
+label.search_db_all = Search all of {0}
+label.search_db_index = Search {0} index {1}
label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";"
-label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";"
+label.separate_multiple_query_values = Enter one or more {0} separated by a semi-colon ";"
label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This searches the entire database)
label.replace_commas_semicolons = Replace commas with semi-colons
label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0}
@@ -997,6 +1025,8 @@ label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service
label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry
label.pca_recalculating = Recalculating PCA
label.pca_calculating = Calculating PCA
+label.pasimap_recalculating = Recalculating PaSiMap
+label.pasimap_calculating = Calculating PaSiMap
label.select_foreground_colour = Choose foreground colour
label.select_colour_for_text = Select Colour for Text
label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold
@@ -1323,6 +1353,7 @@ label.annotation_description = Annotation Description
label.edit_annotation_name_description = Edit Annotation Name/Description
label.alignment = alignment
label.pca = PCA
+label.pasimap = PaSiMap
label.create_image_of = Create {0} image of {1}
label.click_to_edit = Click to edit, right-click for menu
label.backupfiles_confirm_delete = Confirm delete
@@ -1332,6 +1363,7 @@ label.backupfiles_confirm_save_file_backupfiles_roll_wrong = Something possibly
label.backupfiles_confirm_save_new_saved_file_ok = The new saved file seems okay.
label.backupfiles_confirm_save_new_saved_file_not_ok = The new saved file might not be okay.
label.continue_operation = Continue operation?
+label.continue = Continue
label.backups = Backups
label.backup = Backup
label.backup_files = Backup Files
@@ -1391,6 +1423,8 @@ label.click_to_edit = Click to edit, right-click for menu
label.by_annotation_tooltip = Annotation Colour is configured from the main Colour menu
label.show_linked_features = Show {0} features
label.on_top = on top
+label.include_features = Include Features
+label.search_features = Search descriptions of displayed features
label.include_linked_features = Include {0} features
label.include_linked_tooltip = Include visible {0} features
converted to local sequence coordinates
label.features_not_shown = {0} feature(s) not shown
@@ -1399,6 +1433,7 @@ label.ignore_hidden = Ignore hidden columns
label.ignore_hidden_tooltip = Ignore any characters in hidden columns when matching
label.log_level = Log level
label.log_level_tooltip = Temporarily set the log level for this console. The log level will revert to {0} when this Java console is closed.
+label.copy = Copy
label.copy_to_clipboard = Copy to clipboard
label.copy_to_clipboard_tooltip = Copy all of the log text in this console to the system clipboard
label.startup = Startup
@@ -1412,3 +1447,24 @@ label.maximum_memory_tooltip = Enter memory as an integer number optionally foll
label.adjustments_for_this_computer = Adjustments for this computer
label.memory_example_text = Maximum memory that would be used with these settings on this computer
label.memory_example_tooltip = The memory allocated to Jalview is the smaller of the percentage of physical memory (default 90%) and the maximum absolute memory (default 32GB). If your computer's memory cannot be ascertained then the maximum absolute memory defaults to 8GB (if not customised).
Jalview will always try and reserve 512MB for the OS and at least 512MB for itself.
+warning.wrong_jvm_version_title = Wrong Java Version
+warning.wrong_jvm_version_message = The Java version being used (Java {0}) may lead to problems.\nThis installation of Jalview should be used with Java {1}.
+label.alphafold_reliability = Alphafold Reliability
+label.tftype_default = Default
+label.tftype_plddt = pLDDT
+label.optional = (optional)
+label.choose_tempfac_type = Choose Temperature Factor type
+label.interpret_tempfac_as = Interpret Temperature Factor as
+label.add_pae_matrix_file = Add PAE matrix file
+label.nothing_selected = Nothing selected
+prompt.analytics_title = Jalview Usage Statistics
+prompt.analytics = Do you want to help make Jalview better by enabling the collection of usage statistics with Plausible analytics?\nYou can enable or disable usage tracking in the preferences.
+label.working_ellipsis = Working ...
+action.show_groups_on_matrix = Show groups on matrix
+action.show_groups_on_matrix_tooltip = When enabled, clusters defined on the matrix's associated tree or below the assigned threshold are shown as different colours on the matrix annotation row
+action.show_tree_for_matrix = Show tree for matrix
+action.show_tree_for_matrix_tooltip = Opens a tree viewer to display the average distance tree for the matrix
+action.cluster_matrix = Cluster matrix
+action.clustering_matrix_for = Calculating tree for matrix {0} and clustering at {1}
+action.cluster_matrix_tooltip = Computes an average distance tree for the matrix and displays it
+