X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=6f47422dfa347d3d946413abae45d84da321144b;hb=839db4a2e67d4b250e079511d51444d64237d3f4;hp=72801dd9ad34678e05b2c60b296b890576e47ed4;hpb=8b70da73fd4073a6e28292d94c1e731878858b66;p=jalview.git diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index 72801dd..6f47422 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -57,8 +57,10 @@ action.by_pairwise_id = by Pairwise Identity action.by_id = by Id action.by_length = by Length action.by_group = by Group +action.unmark_as_reference = Unmark as Reference +action.set_as_reference = Set as Reference action.remove = Remove -action.remove_redundancy = Remove Redundancy +action.remove_redundancy = Remove Redundancy... action.pairwise_alignment = Pairwise Alignments... action.by_rna_helixes = by RNA Helices action.user_defined = User Defined... @@ -107,7 +109,7 @@ action.change_params = Change Parameters action.apply = Apply action.apply_threshold_all_groups = Apply threshold to all groups action.apply_all_groups = Apply to all Groups -action.by_chain = By chain +action.by_chain = By Chain action.by_sequence = By Sequence action.paste_annotations = Paste Annotations action.format = Format @@ -231,9 +233,13 @@ label.all_columns = All Columns label.all_sequences = All Sequences label.selected_columns = Selected Columns label.selected_sequences = Selected Sequences +label.except_selected_sequences = All except selected sequences label.all_but_selected_region = All but Selected Region (Shift+Ctrl+H) label.selected_region = Selected Region label.all_sequences_columns = All Sequences and Columns +label.hide_insertions = Hide columns gapped for selection +label.hide_selected_annotations = Hide selected annotations +label.show_selected_annotations = Show selected annotations label.group_consensus = Group Consensus label.group_conservation = Group Conservation label.show_consensus_histogram = Show Consensus Histogram @@ -248,6 +254,10 @@ label.use_rnaview = Use RNAView for secondary structure label.autoadd_secstr = Add secondary structure annotation to alignment label.autoadd_temp = Add Temperature Factor annotation to alignment label.structure_viewer = Default structure viewer +label.chimera_path = Path to Chimera program +label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.
Double-click to browse for file. +label.invalid_chimera_path = Chimera path not found or not executable +label.chimera_missing = Chimera structure viewer not found.
Please enter the path to Chimera (if installed),
or download and install UCSF Chimera. label.min_colour = Minimum Colour label.max_colour = Maximum Colour label.use_original_colours = Use Original Colours @@ -341,7 +351,7 @@ label.dont_ask_me_again = Don't ask me again label.select_eps_character_rendering_style = Select EPS character rendering style label.invert_selection = Invert Selection label.optimise_order = Optimise Order -label.seq_sort_by_score = Seq sort by Score +label.seq_sort_by_score = Sequence sort by Score label.load_colours = Load Colours label.save_colours = Save Colours label.fetch_das_features = Fetch DAS Features @@ -376,6 +386,7 @@ label.automatically_associate_pdb_files_with_sequences_same_name = Do you want t label.automatically_associate_pdb_files_by_name = Automatically Associate PDB files by name label.ignore_unmatched_dropped_files_info = Do you want to ignore the {0} files whose names did not match any sequence IDs ? label.ignore_unmatched_dropped_files = Ignore unmatched dropped files? +label.view_name_original = Original label.enter_view_name = Enter View Name label.enter_label = Enter label label.enter_label_for_the_structure = Enter a label for the structure? @@ -383,7 +394,7 @@ label.pdb_entry_is_already_displayed = {0} is already displayed.\nDo you want to label.map_sequences_to_visible_window = Map Sequences to Visible Window: {0} label.add_pdbentry_to_view = Do you want to add {0} to the view called\n{1}\n label.align_to_existing_structure_view = Align to existing structure view -label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease try downloading them manually. +label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease retry, or try downloading them manually. label.couldnt_load_file = Couldn't load file label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure. label.no_pdb_id_in_file = No PDB Id in File @@ -435,8 +446,8 @@ label.redundancy_threshold_selection = Redundancy threshold selection label.user_defined_colours = User defined colours label.jalviewLite_release = JalviewLite - Release {0} label.jaview_build_date = Build date: {0} -label.jalview_authors_1 = Authors: : Jim Procter, Andrew Waterhouse, Lauren Lui, Jan Engelhardt, Natasha Sherstnev, -label.jalview_authors_2 = Daniel Barton, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton. +label.jalview_authors_1 = Authors: Jim Procter, Andrew Waterhouse, Mungo Carstairs, Tochukwu Ofoegbu, Lauren Lui, Jan Engelhardt, +label.jalview_authors_2 = Natasha Sherstnev, Daniel Barton, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton. label.jalview_dev_managers = Development managed by The Barton Group, University of Dundee, Scotland, UK. label.jalview_distribution_lists = For help, see the FAQ at www.jalview.org and/or join the jalview-discuss@jalview.org mailing list label.jalview_please_cite = If you use Jalview, please cite: @@ -472,10 +483,8 @@ label.settings_for_type = Settings for {0} label.view_full_application = View in Full Application label.load_associated_tree = Load Associated Tree ... label.load_features_annotations = Load Features/Annotations ... -label.export_features = Export Features -label.export_annotations = Export Annotations -label.jalview_copy = Copy (Jalview Only) -label.jalview_cut = Cut (Jalview Only) +label.export_features = Export Features ... +label.export_annotations = Export Annotations ... label.to_upper_case = To Upper Case label.to_lower_case = To Lower Case label.toggle_case = Toggle Case @@ -487,7 +496,7 @@ label.sequence_details = Sequence Details label.jmol_help = Jmol Help label.chimera_help = Chimera Help label.close_viewer = Close Viewer -label.confirm_close_chimera = Do you want to close the Chimera window? +label.confirm_close_chimera = This will close Jalview''s connection to {0}.
Do you want to close the Chimera window as well? label.chimera_help = Chimera Help label.all = All label.sort_by = Sort alignment by @@ -591,7 +600,7 @@ label.figure_id_column_width = Figure ID column width label.use_modeller_output = Use Modeller Output label.wrap_alignment = Wrap Alignment label.right_align_ids = Right Align Ids -label.sequence_name_italics = Seq Name Italics +label.sequence_name_italics = Sequence Name Italics label.open_overview = Open Overview label.default_colour_scheme_for_alignment = Default Colour Scheme for alignment label.annotation_shading_default = Annotation Shading Default @@ -683,12 +692,26 @@ label.save_png_image = Save As PNG Image label.load_tree_for_sequence_set = Load a tree for this sequence set label.export_image = Export Image label.vamsas_store = VAMSAS store -label.translate_cDNA = Translate cDNA +label.translate_cDNA = Translate as cDNA +label.cdna = cDNA +label.link_cdna = Link cDNA +label.link_cdna_tip = Link to any compatible cDNA alignments.
Sequences are linked that have the same name and compatible lengths. +label.no_cdna = No compatible cDNA was found +label.linked_cdna = {0} cDNA alignments linked +label.cdna_all_linked = All {0} compatible cDNA alignments are already linked +label.align_cdna = Align linked cDNA +label.align_cdna_tip = Any linked cDNA sequences will be realigned to match this alignment. +label.cdna_aligned = {0} sequences in {1} alignments were realigned +label.view_as_cdna = Show aligned cDNA +label.view_as_cdna_tip = Open a new alignment of the related cDNA sequences +label.linked_view_title = Linked cDNA and protein view +label.align = Align label.extract_scores = Extract Scores label.get_cross_refs = Get Cross References label.sort_alignment_new_tree = Sort Alignment With New Tree label.add_sequences = Add Sequences label.new_window = New Window +label.split_window = Split Window label.refresh_available_sources = Refresh Available Sources label.use_registry = Use Registry label.add_local_source = Add Local Source @@ -728,6 +751,7 @@ label.paste_new_window = Paste To New Window label.settings_for_param = Settings for {0} label.view_params = View {0} label.select_all_views = Select all views +label.all_views = All Views label.align_sequences_to_existing_alignment = Align sequences to an existing alignment label.realign_with_params = Realign with {0} label.calcname_with_default_settings = {0} with Defaults @@ -775,7 +799,9 @@ label.services_at = Services at {0} label.rest_client_submit = {0} using {1} label.fetch_retrieve_from =Retrieve from {0} label.fetch_retrieve_from_all_sources = Retrieve from all {0} sources in {1}
First is :{2} -label.feature_settings_click_drag = Click/drag feature types up or down to change render order.
Double click to select columns containing feature in alignment/current selection
Pressing Alt will select columns outside features rather than inside
Pressing Shift to modify current selection (rather than clear current selection)
Press CTRL or Command/Meta to toggle columns in/outside features
+#label.feature_settings_click_drag = Click/drag feature types up or down to change render order.
Double click to select columns containing feature in alignment/current selection
Pressing Alt will select columns outside features rather than inside
Pressing Shift to modify current selection (rather than clear current selection)
Press CTRL or Command/Meta to toggle columns in/outside features
+label.feature_settings_click_drag = Drag up or down to change render order.
Double click to select columns containing feature. +label.transparency_tip = Adjust transparency to 'see through' feature colours. label.opt_and_params_further_details = see further details by right-clicking label.opt_and_params_show_brief_desc_image_link = Click to show brief description
Right click for further information. label.opt_and_params_show_brief_desc = Click to show brief description
@@ -1089,6 +1115,7 @@ warn.job_cannot_be_cancelled_close_window = This job cannot be cancelled.\nJust warn.service_not_supported = Service not supported! warn.input_is_too_big = Input is too big! warn.invalid_job_param_set = Invalid job parameter set! +warn.oneseq_msainput_selection = The current selection only contains a single sequence. Do you want to submit all sequences for alignment instead ? info.job_couldnt_be_run_server_doesnt_support_program = Job could not be run because the server doesn't support this program.\n{0} info.job_couldnt_be_run_exceeded_hard_limit = Job could not be run because it exceeded a hard limit on the server.\n{0} info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service\!\n @@ -1098,6 +1125,8 @@ info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JNet job result data\!\n{2} info.failed_to_submit_sequences_for_alignment = Failed to submit sequences for alignment.\nIt is most likely that there is a problem with the server.\nJust close the window\n info.alignment_object_method_notes = \nAlignment Object Method Notes\n info.server_exception = \n{0} Server exception\!\n{1} +info.invalid_msa_input_mininfo = Need at least two sequences with at least 3 residues each, with no hidden regions between them. +info.invalid_msa_notenough = Not enough sequence data to align status.processing_commandline_args = Processing commandline arguments... status.das_features_being_retrived = DAS features being retrieved... status.searching_for_sequences_from = Searching for sequences from {0} @@ -1167,3 +1196,25 @@ label.show_logo = Show Logo label.normalise_logo = Normalise Logo label.no_colour_selection_in_scheme = Please, make a colour selection before to apply colour scheme label.no_colour_selection_warn = Error saving colour scheme +label.open_split_window? = Would you like to open as a split window, with cDNA and protein linked? +label.open_split_window = Open split window +label.no_mappings = No mappings found +label.mapping_failed = No sequence mapping could be made between the alignments.
A mapping requires sequence names to match, and equivalent sequence lengths. +action.no = No +action.yes = Yes +label.for = for +label.select_by_annotation = Select By Annotation +action.select_by_annotation = Select by Annotation... +label.threshold_filter = Threshold Filter +action.hide = Hide +action.select = Select +label.alpha_helix = Alpha Helix +label.beta_strand = Beta Strand +label.turn = Turn +label.select_all = Select All +label.structures_filter = Structures Filter +label.search_filter = Search Filter +label.display_name = Display Label +label.description = Description +label.include_description= Include Description +label.start_jalview = Start Jalview