X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=a4f64971cd78a42a930c19f562c61a084d54295a;hb=81dc22411a15b2afb62ef80124db37479c5e764f;hp=ee6b92dcea39315b1b778825890216bbb33bfa15;hpb=2771b2433e6a8dfe171bc9d765381e287f8f221a;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index ee6b92d..a4f6497 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -1,4 +1,4 @@
-label.view_structureaction.refresh_services = Refresh Services
+action.refresh_services = Refresh Services
 action.reset_services = Reset Services
 action.merge_results = Merge Results
 action.load_scheme = Load scheme
@@ -121,7 +121,7 @@ action.save_as_default = Save as default
 action.save_as = Save as
 action.save = Save
 action.cancel_fetch = Cancel Fetch
-action.save_omit_hidden_columns = Save / Omit Hidden Columns
+action.save_omit_hidden_columns = Save / Omit Hidden Regions
 action.change_font = Change Font
 action.change_font_tree_panel = Change Font (Tree Panel)
 action.colour = Colour
@@ -258,6 +258,7 @@ label.chimera_path = Path to Chimera program
 label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.<br>Double-click to browse for file.
 label.invalid_chimera_path = Chimera path not found or not executable
 label.chimera_missing = Chimera structure viewer not found.<br/>Please enter the path to Chimera (if installed),<br/>or download and install UCSF Chimera.
+label.chimera_failed = Error opening Chimera - is it installed?\nCheck path in Preferences, Structure
 label.min_colour = Minimum Colour
 label.max_colour = Maximum Colour
 label.use_original_colours = Use Original Colours
@@ -361,7 +362,7 @@ label.example = Example
 label.example_param = Example: {0}
 label.select_file_format_before_saving = You must select a file format before saving!
 label.file_format_not_specified = File format not specified
-label.alignment_contains_hidden_columns = The Alignment contains hidden columns.\nDo you want to save only the visible alignment?
+label.alignment_contains_hidden_columns = The Alignment contains hidden regions (hidden sequences/columns).\nDo you want to save only the visible alignment?
 label.couldnt_save_file = Couldn't save file: {0}
 label.error_saving_file = Error Saving File
 label.remove_from_default_list = Remove from default list?
@@ -661,7 +662,7 @@ label.cancel_job_close_dialog = Close this dialog and cancel job
 label.input_output = Input/Output
 label.cut_paste = Cut'n'Paste
 label.adjusting_parameters_for_calculation = Adjusting parameters for existing Calculation
-label.2d_rna_structure_line = 2D RNA {0}
+label.2d_rna_structure_line = 2D RNA {0} (alignment)
 label.2d_rna_sequence_name = 2D RNA - {0}
 label.edit_name_and_description_current_group = Edit name and description of current group.
 label.view_structure_for = View structure for {0}
@@ -676,7 +677,8 @@ label.text_colour = Text Colour
 label.structure = Structure
 label.view_structure = View Structure
 label.view_protein_structure = View Protein Structure
-label.view_rna_structure = View Nucleotide Structure
+label.show_pdbstruct_dialog = 3D Structure Data ...
+label.view_rna_structure = VARNA 2D Structure
 label.clustalx_colours = Clustalx colours
 label.above_identity_percentage = Above % Identity
 label.create_sequence_details_report_annotation_for = Annotation for {0}
@@ -770,7 +772,7 @@ label.transformed_points_for_params = Transformed points for {0}
 label.graduated_color_for_params = Graduated Feature Colour for {0}
 label.select_backgroud_colour = Select Background Colour
 label.invalid_font = Invalid Font
-label.separate_multiple_accession_ids = Enter one or more PDB Ids
+label.separate_multiple_accession_ids = Enter one or more PDB accession IDs separated by a semi-colon ";"
 label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";"
 label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This Searches the entire PDB database)
 label.replace_commas_semicolons = Replace commas with semi-colons
@@ -1147,6 +1149,10 @@ status.no_das_sources_active = No DAS Sources Active
 status.das_feature_fetching_cancelled = DAS Feature Fetching Cancelled
 status.das_feature_fetching_complete = DAS Feature Fetching Complete
 status.fetching_db_refs = Fetching db refs
+status.loading_cached_pdb_entries = Loading Cached PDB Entries
+status.searching_for_pdb_structures = Searching for PDB Structures
+status.opening_file = opening file
+status.colouring_chimera = Colouring Chimera
 label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data
 label.font_too_small = Font size is too small
 label.error_loading_file_params = Error loading file {0}
@@ -1160,6 +1166,8 @@ label.couldnt_create_sequence_fetcher = Couldn't create SequenceFetcher
 warn.couldnt_create_sequence_fetcher_client = Could not create the sequence fetcher client. Check error logs for details.
 warn.server_didnt_pass_validation = Service did not pass validation.\nCheck the Jalview Console for more details.
 warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$ or a regex $SEQUENCE_ID=/<regex>/=$
+warn.urls_not_contacted = URLs that could not be contacted
+warn.urls_no_jaba = URLs without any JABA Services
 info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results)
 label.test_server = Test Server?
 info.you_want_jalview_to_find_uniprot_accessions = Do you want Jalview to find\nUniprot Accession ids for given sequence names?
@@ -1199,8 +1207,8 @@ label.mapping_failed = No sequence mapping could be made between the alignments.
 action.no = No
 action.yes = Yes
 label.for = for
-label.select_by_annotation = Select By Annotation
-action.select_by_annotation = Select by Annotation...
+label.select_by_annotation = Select/Hide Columns by Annotation
+action.select_by_annotation = Select/Hide Columns by Annotation...
 label.threshold_filter =  Threshold Filter
 action.hide = Hide
 action.select = Select
@@ -1210,7 +1218,6 @@ label.turn = Turn
 label.select_all = Select All
 label.structures_filter = Structures Filter
 label.search_filter = Search Filter
-label.display_name = Display Label
 label.description = Description
 label.include_description= Include Description
 action.back = Back
@@ -1235,3 +1242,28 @@ label.biojs_html_export = BioJS
 label.scale_as_cdna = Scale protein residues to codons
 label.scale_protein_to_cdna = Scale Protein to cDNA
 label.scale_protein_to_cdna_tip = Make protein residues same width as codons in split frame views
+info.select_annotation_row = Select Annotation Row
+info.enter_search_text_here = Enter Search Text Here
+info.enter_search_text_to_enable = Enter Search Text to Enable
+info.search_in_annotation_label = Search in {0} Label
+info.search_in_annotation_description = Search in {0} Description
+info.change_threshold_mode_to_enable = Change Threshold Mode to Enable
+label.couldnt_read_data = Couldn't read data
+label.embbed_biojson = Embed BioJSON to HTML export
+action.export_groups = Export Groups
+action.export_annotations = Export Annotations
+action.export_hidden_columns = Export Hidden Columns
+action.export_hidden_sequences = Export Hidden Sequences
+action.export_features = Export Features
+label.export_settings = Export Settings
+label.save_as_biojs_html = Save as BioJs HTML
+label.pdb_web-service_error = PDB Web-service Error
+label.structure_chooser_manual_association = Structure Chooser - Manual association
+label.structure_chooser_filter_time = Structure Chooser - Filter time ({0})
+label.structure_chooser_no_of_structures = Structure Chooser - {0} Found ({1})
+info.no_pdb_entry_found_for = No PDB entry found for {0}
+exception.unable_to_detect_internet_connection = Jalview is unable to detect an internet connection
+exception.pdb_rest_service_no_longer_available = PDB rest services no longer available!
+exception.resource_not_be_found = The requested resource could not be found
+exception.pdb_server_error = There seems to be an error from the PDB server
+exception.pdb_server_unreachable = Jalview is unable to reach the PDBe Solr server. \nPlease ensure that you are connected to the internet and try again.