X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=a86154c45282f9d0ae2ec8ebb3fe1d8eb769a732;hb=7dc7fb2a35c435d825bc91c5ae60ec6073419a69;hp=d8c9ad3e5714a39dd59f03833b8ba9230f974ca5;hpb=00485a3e720fd41222e305da31e81278752a79a8;p=jalview.git

diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index d8c9ad3..a86154c 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -125,6 +125,8 @@ action.change_font_tree_panel = Change Font (Tree Panel)
 action.colour = Colour
 action.calculate = Calculate
 action.select_all = Select all
+action.select_highlighted_columns = Select Highlighted Columns
+tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns 
 action.deselect_all = Deselect all
 action.invert_selection = Invert selection
 action.using_jmol = Using Jmol
@@ -321,7 +323,7 @@ label.size = Size:
 label.style = Style:
 label.calculating = Calculating....
 label.modify_conservation_visibility = Modify conservation visibility
-label.colour_residues_above_occurence = Colour residues above % occurence
+label.colour_residues_above_occurence = Colour residues above % occurrence
 label.set_this_label_text = set this label text
 label.sequences_from = Sequences from {0}
 label.successfully_loaded_file  = Successfully loaded file {0}
@@ -833,7 +835,7 @@ label.colour_by = Colour by...
 label.muscle_multiple_protein_sequence_alignment = Muscle Multiple Protein Sequence Alignment
 label.mafft_multiple_sequence_alignment = MAFFT Multiple Sequence Alignment
 label.clustalw_multiple_sequence_alignment = ClustalW Multiple Sequence Alignment
-label.jnet_secondary_structure_prediction = JNet Secondary Structure Prediction
+label.jnet_secondary_structure_prediction = JPred Secondary Structure Prediction
 label.multiharmony = Multi-Harmony
 label.unable_start_web_service_analysis = Unable to start web service analysis
 label.job_couldnt_be_started_check_input = The Job couldn't be started. Please check your input, and the Jalview console for any warning messages.
@@ -967,7 +969,7 @@ error.cannot_have_zero_length_vector_replacement_strings = Cannot have zero leng
 error.implementation_error_multiple_single_sequence_prediction_jobs_not_supported = Implementation Error! Multiple single sequence prediction jobs are not yet supported
 error.implementation_error_invalid_msa_index_for_job =Implementation Error! Invalid msaIndex for JPredJob on parent MSA input object!
 error.implementation_error_startjob_called = Implementation error - StartJob(JpredJob) called on {0}
-error.multiple_jnet_subjob_merge_not_implemented = Multiple JNet subjob merging not yet implemented
+error.multiple_jnet_subjob_merge_not_implemented = Multiple JPred subjob merging not yet implemented
 label.job_never_ran = Job never ran - input returned to user.
 error.implementation_error_minlen_must_be_greater_zero = Implementation error: minlen must be zero or more
 error.implementation_error_msawbjob_called = Implementation error - StartJob(MsaWSJob) called on a WSJobInstance {0}
@@ -1075,7 +1077,7 @@ exception.unexpected_handling_rnaml_translation_for_pdb = Unexpected exception w
 exception.couldnt_recover_sequence_properties_for_alignment = Couldn't recover sequence properties for alignment
 exception.unknown_format_for_file = Unknown format {0} for file \: \n{1}
 label.remove_gaps = Remove Gaps
-exception.couldnt_recover_sequence_props_for_jnet_query = Couldn't recover sequence properties for JNet Query sequence!
+exception.couldnt_recover_sequence_props_for_jnet_query = Couldn't recover sequence properties for JPred Query sequence!
 exception.server_timeout_try_later = Server timed out - try again later\n
 exception.web_service_returned_null_try_later= Server at {0} returned null object, it probably cannot be contacted. Try again later.
 exception.cannot_contact_service_endpoint_at = Cannot contact service endpoint at {0}
@@ -1097,7 +1099,7 @@ info.job_couldnt_be_run_exceeded_hard_limit = Job could not be run because it ex
 info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service\!\n
 info.no_jobs_ran = No jobs ran
 info.failed_to_submit_prediction = Failed to submit the prediction\:\n{0} {1}
-info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JNet job result data\!\n{2}
+info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JPred job result data\!\n{2}
 info.failed_to_submit_sequences_for_alignment = Failed to submit sequences for alignment.\nIt is most likely that there is a problem with the server.\nJust close the window\n
 info.alignment_object_method_notes = \nAlignment Object Method Notes\n
 info.server_exception = \n{0} Server exception\!\n{1}
@@ -1144,7 +1146,7 @@ warn.user_defined_width_requirements = The user defined width for the\nannotatio
 label.couldnt_create_sequence_fetcher = Couldn't create SequenceFetcher
 warn.couldnt_create_sequence_fetcher_client = Could not create the sequence fetcher client. Check error logs for details.
 warn.server_didnt_pass_validation = Service did not pass validation.\nCheck the Jalview Console for more details.
-warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$ or a regex $SEQUENCE_ID=/<regex>/=$
+warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$, $DB_ACCESSION$, or a regex
 warn.urls_not_contacted = URLs that could not be contacted
 warn.urls_no_jaba = URLs without any JABA Services
 info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results)
@@ -1272,3 +1274,4 @@ label.SEQUENCE_ID_no_longer_used = $SEQUENCE_ID$ is no longer used for DB access
 label.SEQUENCE_ID_for_DB_ACCESSION1 = Please review your URL links in the 'Connections' tab of the Preferences window:
 label.SEQUENCE_ID_for_DB_ACCESSION2 = URL links using '$SEQUENCE_ID$' for DB accessions now use '$DB_ACCESSION$'.
 label.do_not_display_again = Do not display this message again
+label.output_seq_details = Output Sequence Details to list all database references