X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=a9418b553db1c8c3f86373749128ed910638507e;hb=cee29c9fa89ed1d1df7b3af9f97055d8cd6eb77e;hp=c33ecccb3b744a17752e21a505efa792af6ee4b6;hpb=909ef48f06550d35c36783dd69ac2590a29f3c21;p=jalview.git diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index c33eccc..a9418b5 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -61,7 +61,6 @@ action.set_as_reference = Set as Reference action.remove = Remove action.remove_redundancy = Remove Redundancy... action.pairwise_alignment = Pairwise Alignment -action.by_rna_helixes = By RNA Helices action.user_defined = User Defined... action.by_conservation = By Conservation action.wrap = Wrap @@ -79,7 +78,8 @@ action.scale_left = Scale Left action.scale_right = Scale Right action.by_tree_order = By Tree Order action.sort = Sort -action.calculate_tree = Calculate Tree +action.calculate_tree = Calculate Tree... +action.calculate_tree_pca = Calculate Tree or PCA... action.help = Help action.by_annotation = By Annotation... action.invert_sequence_selection = Invert Sequence Selection @@ -169,6 +169,7 @@ label.redo_command = Redo {0} label.principal_component_analysis = Principal Component Analysis label.average_distance_identity = Average Distance Using % Identity label.neighbour_joining_identity = Neighbour Joining Using % Identity +label.choose_tree = Choose Tree Calculation label.treecalc_title = {0} Using {1} label.tree_calc_av = Average Distance label.tree_calc_nj = Neighbour Joining @@ -180,27 +181,30 @@ label.score_model_conservation = Physicochemical property conservation label.score_model_enhconservation = Physicochemical property conservation label.status_bar = Status bar label.out_to_textbox = Output to Textbox -label.clustalx = Clustalx +# delete Clustal - use FileFormat name instead label.clustal = Clustal -label.zappo = Zappo -label.taylor = Taylor +# label.colourScheme_ as in JalviewColourScheme +label.colourScheme_clustal = Clustalx +label.colourScheme_blosum62 = BLOSUM62 Score +label.colourScheme_%_identity = Percentage Identity +label.colourScheme_zappo = Zappo +label.colourScheme_taylor = Taylor +label.colourScheme_hydrophobic = Hydrophobicity +label.colourScheme_helix_propensity = Helix Propensity +label.colourScheme_strand_propensity = Strand Propensity +label.colourScheme_turn_propensity = Turn Propensity +label.colourScheme_buried_index = Buried Index +label.colourScheme_purine/pyrimidine = Purine/Pyrimidine +label.colourScheme_nucleotide = Nucleotide +label.colourScheme_t-coffee_scores = T-Coffee Scores +label.colourScheme_rna_helices = By RNA Helices label.blc = BLC label.fasta = Fasta label.msf = MSF label.pfam = PFAM label.pileup = Pileup label.pir = PIR -label.hydrophobicity = Hydrophobicity -label.helix_propensity = Helix Propensity -label.strand_propensity = Strand Propensity -label.turn_propensity = Turn Propensity -label.buried_index = Buried Index -label.purine_pyrimidine = Purine/Pyrimidine -label.percentage_identity = Percentage Identity -label.blosum62 = BLOSUM62 -label.blosum62_score = BLOSUM62 Score -label.tcoffee_scores = T-Coffee Scores -label.average_distance_bloslum62 = Average Distance Using BLOSUM62 +label.average_distance_blosum62 = Average Distance Using BLOSUM62 label.neighbour_blosum62 = Neighbour Joining Using BLOSUM62 label.show_annotations = Show annotations label.hide_annotations = Hide annotations @@ -212,7 +216,7 @@ label.hide_all = Hide all label.add_reference_annotations = Add reference annotations label.find_tip = Search alignment, selection or sequence ids for a subsequence (ignoring gaps).
Accepts regular expressions - search Help for 'regex' for details. label.colour_text = Colour Text -label.show_non_conversed = Show nonconserved +label.show_non_conserved = Show nonconserved label.overview_window = Overview Window label.none = None label.above_identity_threshold = Above Identity Threshold @@ -324,10 +328,11 @@ label.size = Size: label.style = Style: label.calculating = Calculating.... label.modify_conservation_visibility = Modify conservation visibility -label.colour_residues_above_occurence = Colour residues above % occurence +label.colour_residues_above_occurrence = Colour residues above % occurrence label.set_this_label_text = set this label text label.sequences_from = Sequences from {0} label.successfully_loaded_file = Successfully loaded file {0} +label.successfully_loaded_matrix = Successfully loaded score matrix {0} label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format. label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard. label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment. @@ -670,8 +675,6 @@ action.set_text_colour = Text Colour... label.structure = Structure label.show_pdbstruct_dialog = 3D Structure Data... label.view_rna_structure = VARNA 2D Structure -label.clustalx_colours = Clustalx colours -label.above_identity_percentage = Above % Identity label.create_sequence_details_report_annotation_for = Annotation for {0} label.sequence_details_for = Sequence Details for {0} label.sequence_name = Sequence Name @@ -721,7 +724,8 @@ label.mark_unlinked_leaves = Mark Unlinked Leaves label.associate_leaves_with = Associate Leaves With label.save_colour_scheme_with_unique_name_added_to_colour_menu = Save your colour scheme with a unique name and it will be added to the Colour menu label.case_sensitive = Case Sensitive -label.lower_case_colour = Lower Case Colour +label.lower_case_colour = Colour All Lower Case +label.lower_case_tip = Chosen colour applies to all lower case symbols label.index_by_host = Index by Host label.index_by_type = Index by Type label.enable_jabaws_services = Enable JABAWS Services @@ -770,7 +774,7 @@ label.original_data_for_params = Original Data for {0} label.points_for_params = Points for {0} label.transformed_points_for_params = Transformed points for {0} label.graduated_color_for_params = Graduated Feature Colour for {0} -label.select_backgroud_colour = Select Background Colour +label.select_background_colour = Select Background Colour label.invalid_font = Invalid Font label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";" label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";" @@ -889,6 +893,7 @@ label.choose_filename_for_param_file = Choose a filename for this parameter file label.save_as_html = Save as HTML label.recently_opened = Recently Opened label.blasting_for_unidentified_sequence_jobs_running = BLASTing for unidentified sequences - {0} jobs running. +label.tree = Tree label.tree_from = Tree from {0} label.webservice_job_title = {0} using {1} label.select_visible_region_of = selected {0} region of {1} @@ -960,7 +965,6 @@ error.implementation_error_maplist_is_null = Implementation error. MapList is nu error.implementation_error_cannot_have_null_alignment = Implementation error: Cannot have null alignment property key error.implementation_error_null_fileparse = Implementation error. Null FileParse in copy constructor error.implementation_error_cannot_map_alignment_sequences = IMPLEMENTATION ERROR: Cannot map an alignment of sequences from different datasets into a single alignment in the vamsas document. -error.implementation_error_cannot_duplicate_colour_scheme = Serious implementation error: cannot duplicate colourscheme {0} error.implementation_error_structure_selection_manager_null = Implementation error. Structure selection manager's context is 'null' exception.ssm_context_is_null = SSM context is null error.idstring_seqstrings_only_one_per_sequence = idstrings and seqstrings contain one string each per sequence @@ -1025,7 +1029,6 @@ exception.replace_null_regex_pointer = Replacer has null Regex pointer exception.bad_pattern_to_regex_perl_code = bad pattern to Regex.perlCode: {0} exception.no_stub_implementation_for_interface = There is no stub implementation for the interface: {0} exception.cannot_set_endpoint_address_unknown_port = Cannot set Endpoint Address for Unknown Port {0} -exception.querying_matching_opening_parenthesis_for_non_closing_parenthesis = Querying matching opening parenthesis for non-closing parenthesis character {0} exception.mismatched_unseen_closing_char = Mismatched (unseen) closing character {0} exception.mismatched_closing_char = Mismatched closing character {0} exception.mismatched_opening_char = Mismatched opening character {0} at {1} @@ -1036,7 +1039,6 @@ exception.couldnt_parse_responde_from_annotated3d_server = Couldn't parse respon exception.application_test_npe = Application test: throwing an NullPointerException It should arrive at the console exception.overwriting_vamsas_id_binding = Overwriting vamsas id binding exception.overwriting_jalview_id_binding = Overwriting jalview id binding -error.implementation_error_unknown_file_format_string = Implementation error: Unknown file format string exception.failed_to_resolve_gzip_stream = Failed to resolve GZIP stream exception.problem_opening_file_also_tried = Problem opening {0} (also tried {1}) : {2} exception.problem_opening_file = Problem opening {0} : {1} @@ -1232,7 +1234,6 @@ action.export_hidden_columns = Export Hidden Columns action.export_hidden_sequences = Export Hidden Sequences action.export_features = Export Features label.export_settings = Export Settings -label.save_as_biojs_html = Save as BioJs HTML label.pdb_web-service_error = PDB Web-service Error label.structure_chooser_manual_association = Structure Chooser - Manual association label.structure_chooser_filter_time = Structure Chooser - Filter time ({0})