X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=bfd48ed839746e569c4d2060b85f09cb79acc442;hb=231667fa88c8c8e333c927143d6a9650fd4f4035;hp=01ba0fff889cd947615c1b87b2d4e92ccd6be341;hpb=d0d8e3e2f528581af454e5b2a51372a9f4677114;p=jalview.git diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index 01ba0ff..4e31b62 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -3,6 +3,9 @@ action.reset_services = Reset Services action.merge_results = Merge Results action.load_scheme = Load scheme action.save_scheme = Save scheme +label.scheme_changed = Changes to scheme ''{0}'' have not been saved.

Save changes, or continue without saving to make a new colour scheme. +label.save_changes = Save Changes +label.dont_save_changes = Don't Save action.save_image = Save Image action.paste = Paste action.show_html_source = Show HTML Source @@ -61,7 +64,6 @@ action.set_as_reference = Set as Reference action.remove = Remove action.remove_redundancy = Remove Redundancy... action.pairwise_alignment = Pairwise Alignment -action.by_rna_helixes = By RNA Helices action.user_defined = User Defined... action.by_conservation = By Conservation action.wrap = Wrap @@ -69,7 +71,6 @@ action.show_gaps = Show Gaps action.show_hidden_markers = Show Hidden Markers action.find = Find action.undefine_groups = Undefine Groups -action.create_groups = Create Groups action.make_groups_selection = Make Groups For Selection action.copy = Copy action.cut = Cut @@ -79,7 +80,8 @@ action.scale_left = Scale Left action.scale_right = Scale Right action.by_tree_order = By Tree Order action.sort = Sort -action.calculate_tree = Calculate Tree +action.calculate_tree = Calculate Tree... +action.calculate_tree_pca = Calculate Tree or PCA... action.help = Help action.by_annotation = By Annotation... action.invert_sequence_selection = Invert Sequence Selection @@ -125,6 +127,8 @@ action.change_font_tree_panel = Change Font (Tree Panel) action.colour = Colour action.calculate = Calculate action.select_all = Select all +action.select_highlighted_columns = Select Highlighted Columns +tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns action.deselect_all = Deselect all action.invert_selection = Invert selection action.using_jmol = Using Jmol @@ -137,7 +141,8 @@ action.view_flanking_regions = Show flanking regions label.view_flanking_regions = Show sequence data either side of the subsequences involved in this alignment label.structures_manager = Structures Manager label.nickname = Nickname: -label.url = URL: +label.url = URL +label.url\: = URL: label.input_file_url = Enter URL or Input File label.select_feature = Select feature label.name = Name @@ -166,6 +171,7 @@ label.redo_command = Redo {0} label.principal_component_analysis = Principal Component Analysis label.average_distance_identity = Average Distance Using % Identity label.neighbour_joining_identity = Neighbour Joining Using % Identity +label.choose_calculation = Choose Calculation label.treecalc_title = {0} Using {1} label.tree_calc_av = Average Distance label.tree_calc_nj = Neighbour Joining @@ -173,31 +179,38 @@ label.select_score_model = Select score model label.score_model_pid = % Identity label.score_model_blosum62 = BLOSUM62 label.score_model_pam250 = PAM 250 +label.score_model_smithwatermanscore = Score between two sequences aligned with Smith-Waterman with default Peptide/Nucleotide matrix +label.score_model_sequencefeaturesimilarity = Distance measure of average number of features not shared at sequence positions label.score_model_conservation = Physicochemical property conservation label.score_model_enhconservation = Physicochemical property conservation label.status_bar = Status bar label.out_to_textbox = Output to Textbox -label.clustalx = Clustalx +label.occupancy = Occupancy +# delete Clustal - use FileFormat name instead label.clustal = Clustal -label.zappo = Zappo -label.taylor = Taylor +# label.colourScheme_ as in JalviewColourScheme +label.colourScheme_clustal = Clustalx +label.colourScheme_blosum62 = BLOSUM62 Score +label.colourScheme_%_identity = Percentage Identity +label.colourScheme_zappo = Zappo +label.colourScheme_taylor = Taylor +label.colourScheme_hydrophobic = Hydrophobicity +label.colourScheme_helix_propensity = Helix Propensity +label.colourScheme_strand_propensity = Strand Propensity +label.colourScheme_turn_propensity = Turn Propensity +label.colourScheme_buried_index = Buried Index +label.colourScheme_purine/pyrimidine = Purine/Pyrimidine +label.colourScheme_nucleotide = Nucleotide +label.colourScheme_t-coffee_scores = T-Coffee Scores +label.colourScheme_rna_helices = By RNA Helices +label.colourScheme_sequence_id = Sequence ID Colour label.blc = BLC label.fasta = Fasta label.msf = MSF label.pfam = PFAM label.pileup = Pileup label.pir = PIR -label.hydrophobicity = Hydrophobicity -label.helix_propensity = Helix Propensity -label.strand_propensity = Strand Propensity -label.turn_propensity = Turn Propensity -label.buried_index = Buried Index -label.purine_pyrimidine = Purine/Pyrimidine -label.percentage_identity = Percentage Identity -label.blosum62 = BLOSUM62 -label.blosum62_score = BLOSUM62 Score -label.tcoffee_scores = T-Coffee Scores -label.average_distance_bloslum62 = Average Distance Using BLOSUM62 +label.average_distance_blosum62 = Average Distance Using BLOSUM62 label.neighbour_blosum62 = Neighbour Joining Using BLOSUM62 label.show_annotations = Show annotations label.hide_annotations = Hide annotations @@ -209,7 +222,7 @@ label.hide_all = Hide all label.add_reference_annotations = Add reference annotations label.find_tip = Search alignment, selection or sequence ids for a subsequence (ignoring gaps).
Accepts regular expressions - search Help for 'regex' for details. label.colour_text = Colour Text -label.show_non_conversed = Show nonconserved +label.show_non_conserved = Show nonconserved label.overview_window = Overview Window label.none = None label.above_identity_threshold = Above Identity Threshold @@ -230,7 +243,6 @@ label.documentation = Documentation label.about = About... label.show_sequence_limits = Show Sequence Limits action.feature_settings = Feature Settings... -label.feature_settings = Feature Settings label.all_columns = All Columns label.all_sequences = All Sequences label.selected_columns = Selected Columns @@ -255,6 +267,7 @@ label.use_rnaview = Use RNAView for secondary structure label.autoadd_secstr = Add secondary structure annotation to alignment label.autoadd_temp = Add Temperature Factor annotation to alignment label.structure_viewer = Default structure viewer +label.double_click_to_browse = Double-click to browse for file label.chimera_path = Path to Chimera program label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.
Double-click to browse for file. label.invalid_chimera_path = Chimera path not found or not executable @@ -262,6 +275,7 @@ label.chimera_missing = Chimera structure viewer not found.
Please enter the label.chimera_failed = Error opening Chimera - is it installed?\nCheck path in Preferences, Structure label.min_colour = Minimum Colour label.max_colour = Maximum Colour +label.no_colour = No Colour label.use_original_colours = Use Original Colours label.threshold_minmax = Threshold is min/max label.represent_group_with = Represent Group with {0} @@ -269,9 +283,9 @@ label.selection = Selection label.group_colour = Group Colour label.sequence = Sequence label.view_pdb_structure = View PDB Structure -label.min = Min: -label.max = Max: -label.colour_by_label = Colour by label +label.min_value = Min value +label.max_value = Max value +label.no_value = No value label.new_feature = New Feature label.match_case = Match Case label.view_alignment_editor = View in alignment editor @@ -321,10 +335,11 @@ label.size = Size: label.style = Style: label.calculating = Calculating.... label.modify_conservation_visibility = Modify conservation visibility -label.colour_residues_above_occurence = Colour residues above % occurence +label.colour_residues_above_occurrence = Colour residues above % occurrence label.set_this_label_text = set this label text label.sequences_from = Sequences from {0} label.successfully_loaded_file = Successfully loaded file {0} +label.successfully_loaded_matrix = Successfully loaded score matrix {0} label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format. label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard. label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment. @@ -355,6 +370,8 @@ label.optimise_order = Optimise Order label.seq_sort_by_score = Sequence sort by Score label.load_colours = Load Colours label.save_colours = Save Colours +label.load_colours_tooltip = Load feature colours and filters from file +label.save_colours_tooltip = Save feature colours and filters to file label.fetch_das_features = Fetch DAS Features label.selected_database_to_fetch_from = Selected {0} database {1} to fetch from {2} label.database_param = Database: {0} @@ -368,14 +385,11 @@ label.remove_from_default_list = Remove from default list? label.remove_user_defined_colour = Remove user defined colour label.you_must_select_least_two_sequences = You must select at least 2 sequences. label.invalid_selection = Invalid Selection -label.principal_component_analysis_must_take_least_four_input_sequences = Principal component analysis must take\nat least 4 input sequences. label.sequence_selection_insufficient = Sequence selection insufficient -label.you_need_more_two_sequences_selected_build_tree = You need to have more than two sequences selected to build a tree! +label.you_need_at_least_n_sequences = You need to select at least {0} sequences label.not_enough_sequences = Not enough sequences label.selected_region_to_tree_may_only_contain_residues_or_gaps = The selected region to create a tree may\nonly contain residues or gaps.\nTry using the Pad function in the edit menu,\nor one of the multiple sequence alignment web services. label.sequences_selection_not_aligned = Sequences in selection are not aligned -label.sequences_must_be_aligned_before_creating_tree = The sequences must be aligned before creating a tree.\nTry using the Pad function in the edit menu,\n or one of the multiple sequence alignment web services. -label.sequences_not_aligned = Sequences not aligned label.problem_reading_tree_file = Problem reading tree file label.possible_problem_with_tree_file = Possible problem with tree file label.select_at_least_three_bases_in_at_least_one_sequence_to_cDNA_translation = Please select at least three bases in at least one sequence in order to perform a cDNA translation. @@ -390,10 +404,6 @@ label.view_name_original = Original label.enter_view_name = Enter View Name label.enter_label = Enter label label.enter_label_for_the_structure = Enter a label for the structure -label.pdb_entry_is_already_displayed = {0} is already displayed.\nDo you want to re-use this viewer ? -label.map_sequences_to_visible_window = Map Sequences to Visible Window: {0} -label.add_pdbentry_to_view = Do you want to add {0} to the view called\n{1}\n -label.align_to_existing_structure_view = Align to existing structure view label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease retry, or try downloading them manually. label.couldnt_load_file = Couldn't load file label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure. @@ -409,7 +419,6 @@ label.couldnt_import_as_vamsas_session = Couldn't import {0} as a new vamsas ses label.vamsas_document_import_failed = Vamsas Document Import Failed label.couldnt_locate = Couldn't locate {0} label.url_not_found = URL not found -label.no_link_selected = No link selected label.new_sequence_url_link = New sequence URL link label.cannot_edit_annotations_in_wrapped_view = Cannot edit annotations in wrapped view label.wrapped_view_no_edit = Wrapped view - no edit @@ -481,6 +490,10 @@ label.settings_for_type = Settings for {0} label.view_full_application = View in Full Application label.load_associated_tree = Load Associated Tree... label.load_features_annotations = Load Features/Annotations... +label.load_vcf = Load SNP variants from plain text or indexed VCF data +label.load_vcf_file = Load VCF File +label.searching_vcf = Loading VCF variants... +label.added_vcf = Added {0} VCF variants to {1} sequence(s) label.export_features = Export Features... label.export_annotations = Export Annotations... label.to_upper_case = To Upper Case @@ -511,7 +524,7 @@ label.retrieve_parse_sequence_database_records_alignment_or_selected_sequences = label.standard_databases = Standard Databases label.fetch_embl_uniprot = Fetch from EMBL/EMBLCDS or Uniprot/PDB and any selected DAS sources label.reset_min_max_colours_to_defaults = Reset min and max colours to defaults from user preferences. -label.align_structures_using_linked_alignment_views = Align structures using {0} linked alignment views +label.align_structures_using_linked_alignment_views = Superpose structures using {0} selected alignment view(s) label.connect_to_session = Connect to session {0} label.threshold_feature_display_by_score = Threshold the feature display by score. label.threshold_feature_no_threshold = No Threshold @@ -519,7 +532,6 @@ label.threshold_feature_above_threshold = Above Threshold label.threshold_feature_below_threshold = Below Threshold label.adjust_threshold = Adjust threshold label.toggle_absolute_relative_display_threshold = Toggle between absolute and relative display threshold. -label.display_features_same_type_different_label_using_different_colour = Display features of the same type with a different label using a different colour. (e.g. domain features) label.select_colour_minimum_value = Select Colour for Minimum Value label.select_colour_maximum_value = Select Colour for Maximum Value label.open_url_param = Open URL {0} @@ -616,6 +628,8 @@ label.web_services = Web Services label.right_click_to_edit_currently_selected_parameter = Right click to edit currently selected parameter. label.let_jmol_manage_structure_colours = Let Jmol manage structure colours label.let_chimera_manage_structure_colours = Let Chimera manage structure colours +label.fetch_chimera_attributes = Fetch Chimera attributes +label.fetch_chimera_attributes_tip = Copy Chimera attribute to Jalview feature label.marks_leaves_tree_not_associated_with_sequence = Marks leaves of tree not associated with a sequence label.index_web_services_menu_by_host_site = Index web services in menu by the host site label.option_want_informed_web_service_URL_cannot_be_accessed_jalview_when_starts_up = Check this option if you want to be informed
when a web service URL cannot be accessed by Jalview
when it starts up @@ -662,14 +676,12 @@ label.2d_rna_structure_line = 2D RNA {0} (alignment) label.2d_rna_sequence_name = 2D RNA - {0} label.edit_name_and_description_current_group = Edit name and description of current group label.from_file = From File -label.enter_pdb_id = Enter PDB Id (or pdbid:chaincode) -label.text_colour = Text Colour -action.set_text_colour = Text Colour... +label.enter_pdb_id = Enter PDB Id +label.enter_pdb_id_tip = Enter PDB Id (or pdbid:chaincode) +label.text_colour = Text Colour... label.structure = Structure label.show_pdbstruct_dialog = 3D Structure Data... label.view_rna_structure = VARNA 2D Structure -label.clustalx_colours = Clustalx colours -label.above_identity_percentage = Above % Identity label.create_sequence_details_report_annotation_for = Annotation for {0} label.sequence_details_for = Sequence Details for {0} label.sequence_name = Sequence Name @@ -706,20 +718,25 @@ label.set_as_default = Set as Default label.show_labels = Show labels action.background_colour = Background Colour... label.associate_nodes_with = Associate Nodes With -label.jalview_pca_calculation = Jalview PCA Calculation label.link_name = Link Name label.pdb_file = PDB file label.colour_with_jmol = Colour with Jmol label.colour_with_chimera = Colour with Chimera -label.align_structures = Align Structures +label.superpose_structures = Superpose Structures +error.superposition_failed = Superposition failed: {0} +label.insufficient_residues = Not enough aligned residues ({0}) to perform superposition label.jmol = Jmol label.chimera = Chimera +label.create_chimera_attributes = Write Jalview features +label.create_chimera_attributes_tip = Set Chimera residue attributes for visible features +label.attributes_set = {0} attribute values set on Chimera label.sort_alignment_by_tree = Sort Alignment By Tree label.mark_unlinked_leaves = Mark Unlinked Leaves label.associate_leaves_with = Associate Leaves With label.save_colour_scheme_with_unique_name_added_to_colour_menu = Save your colour scheme with a unique name and it will be added to the Colour menu label.case_sensitive = Case Sensitive -label.lower_case_colour = Lower Case Colour +label.lower_case_colour = Colour All Lower Case +label.lower_case_tip = Chosen colour applies to all lower case symbols label.index_by_host = Index by Host label.index_by_type = Index by Type label.enable_jabaws_services = Enable JABAWS Services @@ -732,7 +749,6 @@ label.delete_sbrs_definition = Delete SBRS Definition label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases.\n(Use Calculate | Show flanking regions to show enclosing sequence.)\nTo preserve data changes, save your alignment.\n\n label.sequences_updated = Sequences updated label.dbref_search_completed = DBRef search completed -label.show_all_chains = Show all chains label.fetch_all_param = Fetch all {0} label.paste_new_window = Paste To New Window label.settings_for_param = Settings for {0} @@ -767,8 +783,8 @@ label.pairwise_aligned_sequences = Pairwise Aligned Sequences label.original_data_for_params = Original Data for {0} label.points_for_params = Points for {0} label.transformed_points_for_params = Transformed points for {0} -label.graduated_color_for_params = Graduated Feature Colour for {0} -label.select_backgroud_colour = Select Background Colour +label.variable_color_for = Variable Feature Colour for {0} +label.select_background_colour = Select Background Colour label.invalid_font = Invalid Font label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";" label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";" @@ -833,7 +849,7 @@ label.colour_by = Colour by... label.muscle_multiple_protein_sequence_alignment = Muscle Multiple Protein Sequence Alignment label.mafft_multiple_sequence_alignment = MAFFT Multiple Sequence Alignment label.clustalw_multiple_sequence_alignment = ClustalW Multiple Sequence Alignment -label.jnet_secondary_structure_prediction = JNet Secondary Structure Prediction +label.jnet_secondary_structure_prediction = JPred Secondary Structure Prediction label.multiharmony = Multi-Harmony label.unable_start_web_service_analysis = Unable to start web service analysis label.job_couldnt_be_started_check_input = The Job couldn't be started. Please check your input, and the Jalview console for any warning messages. @@ -843,7 +859,6 @@ label.couldnt_save_project = Couldn't save project label.error_whilst_saving_current_state_to = Error whilst saving current state to {0} label.error_whilst_loading_project_from = Error whilst loading project from {0} label.couldnt_load_project = Couldn't load project -label.pca_sequences_not_aligned = The sequences must be aligned before calculating PCA.\nTry using the Pad function in the edit menu,\nor one of the multiple sequence alignment web services. label.invalid_name_preset_exists = Invalid name - preset already exists. label.invalid_name = Invalid name label.set_proxy_settings = Please set up your proxy settings in the 'Connections' tab of the Preferences window @@ -855,7 +870,7 @@ label.msa_service_is_unknown = The Multiple Sequence Alignment Service named {0} label.service_called_is_not_seq_search_service = The Service called \n{0}\nis not a \nSequence Search Service\! label.seq_search_service_is_unknown = The Sequence Search Service named {0} is unknown label.feature_type = Feature Type -label.display = Display +label.show = Show label.service_url = Service URL label.copied_sequences = Copied sequences label.cut_sequences = Cut Sequences @@ -887,6 +902,7 @@ label.choose_filename_for_param_file = Choose a filename for this parameter file label.save_as_html = Save as HTML label.recently_opened = Recently Opened label.blasting_for_unidentified_sequence_jobs_running = BLASTing for unidentified sequences - {0} jobs running. +label.tree = Tree label.tree_from = Tree from {0} label.webservice_job_title = {0} using {1} label.select_visible_region_of = selected {0} region of {1} @@ -897,10 +913,10 @@ label.webservice_job_title_on = {0} using {1} on {2} label.updating_vamsas_session = Updating vamsas session label.loading_file = Loading File: {0} label.edit_params = Edit {0} +label.as_percentage = As Percentage error.not_implemented = Not implemented error.no_such_method_as_clone1_for = No such method as clone1 for {0} error.null_from_clone1 = Null from clone1! -error.implementation_error_sortbyfeature = Implementation Error - sortByFeature method must be one of FEATURE_SCORE, FEATURE_LABEL or FEATURE_DENSITY. error.not_yet_implemented = Not yet implemented error.unknown_type_dna_or_pep = Unknown Type {0} - dna or pep are the only allowed values. error.implementation_error_dont_know_threshold_annotationcolourgradient = Implementation error: don't know about threshold setting for current AnnotationColourGradient. @@ -958,7 +974,6 @@ error.implementation_error_maplist_is_null = Implementation error. MapList is nu error.implementation_error_cannot_have_null_alignment = Implementation error: Cannot have null alignment property key error.implementation_error_null_fileparse = Implementation error. Null FileParse in copy constructor error.implementation_error_cannot_map_alignment_sequences = IMPLEMENTATION ERROR: Cannot map an alignment of sequences from different datasets into a single alignment in the vamsas document. -error.implementation_error_cannot_duplicate_colour_scheme = Serious implementation error: cannot duplicate colourscheme {0} error.implementation_error_structure_selection_manager_null = Implementation error. Structure selection manager's context is 'null' exception.ssm_context_is_null = SSM context is null error.idstring_seqstrings_only_one_per_sequence = idstrings and seqstrings contain one string each per sequence @@ -967,7 +982,7 @@ error.cannot_have_zero_length_vector_replacement_strings = Cannot have zero leng error.implementation_error_multiple_single_sequence_prediction_jobs_not_supported = Implementation Error! Multiple single sequence prediction jobs are not yet supported error.implementation_error_invalid_msa_index_for_job =Implementation Error! Invalid msaIndex for JPredJob on parent MSA input object! error.implementation_error_startjob_called = Implementation error - StartJob(JpredJob) called on {0} -error.multiple_jnet_subjob_merge_not_implemented = Multiple JNet subjob merging not yet implemented +error.multiple_jnet_subjob_merge_not_implemented = Multiple JPred subjob merging not yet implemented label.job_never_ran = Job never ran - input returned to user. error.implementation_error_minlen_must_be_greater_zero = Implementation error: minlen must be zero or more error.implementation_error_msawbjob_called = Implementation error - StartJob(MsaWSJob) called on a WSJobInstance {0} @@ -1023,7 +1038,6 @@ exception.replace_null_regex_pointer = Replacer has null Regex pointer exception.bad_pattern_to_regex_perl_code = bad pattern to Regex.perlCode: {0} exception.no_stub_implementation_for_interface = There is no stub implementation for the interface: {0} exception.cannot_set_endpoint_address_unknown_port = Cannot set Endpoint Address for Unknown Port {0} -exception.querying_matching_opening_parenthesis_for_non_closing_parenthesis = Querying matching opening parenthesis for non-closing parenthesis character {0} exception.mismatched_unseen_closing_char = Mismatched (unseen) closing character {0} exception.mismatched_closing_char = Mismatched closing character {0} exception.mismatched_opening_char = Mismatched opening character {0} at {1} @@ -1034,7 +1048,6 @@ exception.couldnt_parse_responde_from_annotated3d_server = Couldn't parse respon exception.application_test_npe = Application test: throwing an NullPointerException It should arrive at the console exception.overwriting_vamsas_id_binding = Overwriting vamsas id binding exception.overwriting_jalview_id_binding = Overwriting jalview id binding -error.implementation_error_unknown_file_format_string = Implementation error: Unknown file format string exception.failed_to_resolve_gzip_stream = Failed to resolve GZIP stream exception.problem_opening_file_also_tried = Problem opening {0} (also tried {1}) : {2} exception.problem_opening_file = Problem opening {0} : {1} @@ -1075,7 +1088,7 @@ exception.unexpected_handling_rnaml_translation_for_pdb = Unexpected exception w exception.couldnt_recover_sequence_properties_for_alignment = Couldn't recover sequence properties for alignment exception.unknown_format_for_file = Unknown format {0} for file \: \n{1} label.remove_gaps = Remove Gaps -exception.couldnt_recover_sequence_props_for_jnet_query = Couldn't recover sequence properties for JNet Query sequence! +exception.couldnt_recover_sequence_props_for_jnet_query = Couldn't recover sequence properties for JPred Query sequence! exception.server_timeout_try_later = Server timed out - try again later\n exception.web_service_returned_null_try_later= Server at {0} returned null object, it probably cannot be contacted. Try again later. exception.cannot_contact_service_endpoint_at = Cannot contact service endpoint at {0} @@ -1097,7 +1110,7 @@ info.job_couldnt_be_run_exceeded_hard_limit = Job could not be run because it ex info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service\!\n info.no_jobs_ran = No jobs ran info.failed_to_submit_prediction = Failed to submit the prediction\:\n{0} {1} -info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JNet job result data\!\n{2} +info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JPred job result data\!\n{2} info.failed_to_submit_sequences_for_alignment = Failed to submit sequences for alignment.\nIt is most likely that there is a problem with the server.\nJust close the window\n info.alignment_object_method_notes = \nAlignment Object Method Notes\n info.server_exception = \n{0} Server exception\!\n{1} @@ -1203,7 +1216,6 @@ label.pdb_sequence_fetcher = PDB Sequence Fetcher label.result = result label.results = results label.structure_chooser = Structure Chooser -label.select = Select : label.invert = Invert label.select_pdb_file = Select PDB File info.select_filter_option = Select Filter Option/Manual Entry @@ -1214,6 +1226,7 @@ label.configure_displayed_columns = Customise Displayed Options label.start_jalview = Start Jalview label.biojs_html_export = BioJS label.scale_as_cdna = Scale protein residues to codons +label.font_as_cdna = Use same font for cDNA and peptide label.scale_protein_to_cdna = Scale Protein to cDNA label.scale_protein_to_cdna_tip = Make protein residues same width as codons in split frame views info.select_annotation_row = Select Annotation Row @@ -1230,7 +1243,6 @@ action.export_hidden_columns = Export Hidden Columns action.export_hidden_sequences = Export Hidden Sequences action.export_features = Export Features label.export_settings = Export Settings -label.save_as_biojs_html = Save as BioJs HTML label.pdb_web-service_error = PDB Web-service Error label.structure_chooser_manual_association = Structure Chooser - Manual association label.structure_chooser_filter_time = Structure Chooser - Filter time ({0}) @@ -1272,4 +1284,83 @@ label.SEQUENCE_ID_no_longer_used = $SEQUENCE_ID$ is no longer used for DB access label.SEQUENCE_ID_for_DB_ACCESSION1 = Please review your URL links in the 'Connections' tab of the Preferences window: label.SEQUENCE_ID_for_DB_ACCESSION2 = URL links using '$SEQUENCE_ID$' for DB accessions now use '$DB_ACCESSION$'. label.do_not_display_again = Do not display this message again +exception.url_cannot_have_duplicate_id = {0} cannot be used as a label for more than one line +label.filter = Filter text: +action.customfilter = Custom only +action.showall = Show All +label.insert = Insert: +action.seq_id = $SEQUENCE_ID$ +action.db_acc = $DB_ACCESSION$ +label.primary = Double Click +label.inmenu = In Menu +label.id = ID +label.database = Database +label.urltooltip = Only one url, which must use a sequence id, can be selected for the 'On Click' option +label.edit_sequence_url_link = Edit sequence URL link +warn.name_cannot_be_duplicate = User-defined URL names must be unique and cannot be MIRIAM ids label.output_seq_details = Output Sequence Details to list all database references +label.urllinks = Links +label.default_cache_size = Default Cache Size +action.clear_cached_items = Clear Cached Items +label.togglehidden = Show hidden regions +label.quality_descr = Alignment Quality based on Blosum62 scores +label.conservation_descr = Conservation of total alignment less than {0}% gaps +label.consensus_descr = PID +label.complement_consensus_descr = PID for cDNA +label.strucconsensus_descr = PID for base pairs +label.occupancy_descr = Number of aligned positions +label.show_experimental = Enable experimental features +label.show_experimental_tip = Enable any new and currently 'experimental' features (see Latest Release Notes for details) +label.warning_hidden = Warning: {0} {1} is currently hidden +label.overview_settings = Overview settings +label.ov_legacy_gap = Use legacy gap colouring (gaps are white) +label.gap_colour = Gap colour: +label.ov_show_hide_default = Show hidden regions when opening overview +label.hidden_colour = Hidden colour: +label.select_gap_colour = Select gap colour +label.select_hidden_colour = Select hidden colour +label.overview = Overview +label.reset_to_defaults = Reset to defaults +label.oview_calc = Recalculating overview... +label.feature_details = Feature details +label.matchCondition_contains = Contains +label.matchCondition_notcontains = Does not contain +label.matchCondition_matches = Matches +label.matchCondition_notmatches = Does not match +label.matchCondition_present = Is present +label.matchCondition_notpresent = Is not present +label.matchCondition_eq = = +label.matchCondition_ne = not = +label.matchCondition_lt = < +label.matchCondition_le = <= +label.matchCondition_gt = > +label.matchCondition_ge = >= +label.numeric_required = The value should be numeric +label.filter = Filter +label.filters = Filters +label.join_conditions = Join conditions with +label.score = Score +label.colour_by_label = Colour by label +label.variable_colour = Variable colour... +label.select_colour = Select colour +option.enable_disable_autosearch = When ticked, search is performed automatically +option.autosearch = Autosearch +label.retrieve_ids = Retrieve IDs +label.display_settings_for = Display settings for {0} features +label.simple = Simple +label.simple_colour = Simple Colour +label.colour_by_text = Colour by text +label.graduated_colour = Graduated Colour +label.by_text_of = By text of +label.by_range_of = By range of +label.filters_tooltip = Click to set or amend filters +label.or = Or +label.and = And +label.sequence_feature_colours = Sequence Feature Colours +label.best_quality = Best Quality +label.best_resolution = Best Resolution +label.most_protein_chain = Most Protein Chain +label.most_bound_molecules = Most Bound Molecules +label.most_polymer_residues = Most Polymer Residues +label.cached_structures = Cached Structures +label.free_text_search = Free Text Search