label.pdb_sequence_mapping = PDB - Sequence Mapping label.pca_details = PCA details +label.pasimap_details = PaSiMap details label.redundancy_threshold_selection = Redundancy threshold selection label.user_defined_colours = User defined colours label.jalviewLite_release = JalviewLite - Release {0} @@ -598,6 +610,7 @@ label.quality = Quality label.maximize_window = Maximize Window label.conservation = Conservation label.consensus = Consensus +label.ssConsensus = Secondary Structure Consensus label.histogram = Histogram label.logo = Logo label.non_positional_features = List Non-positional Features @@ -1023,6 +1036,8 @@ label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry label.pca_recalculating = Recalculating PCA label.pca_calculating = Calculating PCA +label.pasimap_recalculating = Recalculating PaSiMap +label.pasimap_calculating = Calculating PaSiMap label.select_foreground_colour = Choose foreground colour label.select_colour_for_text = Select Colour for Text label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold @@ -1245,8 +1260,8 @@ label.mapping_method = Sequence \u27f7 Structure mapping method status.cancelled_image_export_operation = Cancelled {0} export operation info.error_creating_file = Error creating {0} file exception.outofmemory_loading_mmcif_file = Out of memory loading mmCIF File -label.run_groovy = Run Groovy console script -label.run_groovy_tip = Run the script in the Groovy console over this alignment +label.run_groovy = Run Groovy Console Script +label.run_groovy_tip = Run the script in the Groovy Console over this alignment label.couldnt_run_groovy_script = Failed to run Groovy script label.uniprot_sequence_fetcher = UniProt Sequence Fetcher action.next_page= >> @@ -1287,6 +1302,8 @@ label.togglehidden = Show hidden regions label.quality_descr = Alignment Quality based on Blosum62 scores label.conservation_descr = Conservation of total alignment less than {0}% gaps label.consensus_descr = PID +label.ssconsensus_label = Secondary Structure Consensus +label.ssconsensus_descr = Secondary Structure Consensus label.complement_consensus_descr = PID for cDNA label.strucconsensus_descr = PID for base pairs label.occupancy_descr = Number of aligned positions @@ -1349,6 +1366,7 @@ label.annotation_description = Annotation Description label.edit_annotation_name_description = Edit Annotation Name/Description label.alignment = alignment label.pca = PCA +label.pasimap = PaSiMap label.create_image_of = Create {0} image of {1} label.click_to_edit = Click to edit, right-click for menu label.backupfiles_confirm_delete = Confirm delete @@ -1452,4 +1470,23 @@ label.choose_tempfac_type = Choose Temperature Factor type label.interpret_tempfac_as = Interpret Temperature Factor as label.add_pae_matrix_file = Add PAE matrix file label.nothing_selected = Nothing selected -label.working_ellipsis = Working ... \ No newline at end of file +prompt.analytics_title = Jalview Usage Statistics +prompt.analytics = Do you want to help make Jalview better by enabling the collection of usage statistics with Plausible analytics?\nYou can enable or disable usage tracking in the preferences. +label.working_ellipsis = Working ... +action.show_groups_on_matrix = Show groups on matrix +action.show_groups_on_matrix_tooltip = When enabled, clusters defined on the matrix's associated tree or below the assigned threshold are shown as different colours on the matrix annotation row +action.show_tree_for_matrix = Show tree for matrix +action.show_tree_for_matrix_tooltip = Opens a tree viewer to display the average distance tree for the matrix +action.cluster_matrix = Cluster matrix +action.clustering_matrix_for = Calculating tree for matrix {0} and clustering at {1} +action.cluster_matrix_tooltip = Computes an average distance tree for the matrix and displays it +label.all_known_alignment_files = All known alignment files +label.by_extension = By extension +label.by_extension_tooltip = File will be saved in a format corresponding to the given file extension +label.command_line_arguments = Command Line Arguments +warning.using_old_command_line_arguments = It looks like you are using old command line arguments. These are now deprecated and will be removed in a future release of Jalview.\nFind out about the new command line arguments at\n +warning.using_mixed_command_line_arguments = Jalview cannot use both old (-arg) and new (--arg) command line arguments. Please check your command line arguments.\ne.g. {0} and {1} +warning.the_following_errors = The following errors and warnings occurred whilst processing files: +action.show_hetatm = Show Ligands (HETATM) +warning.running_from_installer_volume_title = Running from Installer +warning.running_from_installer_volume_message = You appear to be launching {0} from the Installer volume.\nPlease drag and drop the "{0}" icon into the Applications folder or your user Applications folder, and launch from there.