X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2Flang%2FMessages.properties;h=e4289897aa0649543c5195b5952cb7630f1db6ee;hb=c70d42a1afc972ddb3757b9ec4cece3458d396a1;hp=c6c8793d804e6521fabe0275d439a70d66ff5238;hpb=2e7da637a195ff484f92a333675284f071657cd6;p=jalview.git diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties index c6c8793..e428989 100644 --- a/resources/lang/Messages.properties +++ b/resources/lang/Messages.properties @@ -6,7 +6,7 @@ action.save_scheme = Save scheme action.save_image = Save Image action.paste = Paste action.show_html_source = Show HTML Source -action.print = Print +action.print = Print... action.web_service = Web Service action.cancel_job = Cancel Job action.start_job = Start Job @@ -21,7 +21,7 @@ action.edit = Edit action.new = New action.open_file = Open file action.show_unconserved = Show Unconserved -action.open_new_aligmnent = Open new alignment +action.open_new_alignment = Open new alignment action.raise_associated_windows = Raise Associated Windows action.minimize_associated_windows = Minimize Associated Windows action.close_all = Close all @@ -30,7 +30,7 @@ action.save_project = Save Project action.quit = Quit action.expand_views = Expand Views action.gather_views = Gather Views -action.page_setup = Page Setup +action.page_setup = Page Setup... action.reload = Reload action.load = Load action.open = Open @@ -53,14 +53,16 @@ action.left_justify_alignment = Left Justify Alignment action.right_justify_alignment = Right Justify Alignment action.boxes = Boxes action.text = Text -action.by_pairwise_id = by Pairwise Identity -action.by_id = by Id -action.by_length = by Length -action.by_group = by Group +action.by_pairwise_id = By Pairwise Identity +action.by_id = By Id +action.by_length = By Length +action.by_group = By Group +action.unmark_as_reference = Unmark as Reference +action.set_as_reference = Set as Reference action.remove = Remove -action.remove_redundancy = Remove Redundancy -action.pairwise_alignment = Pairwise Alignments... -action.by_rna_helixes = by RNA Helices +action.remove_redundancy = Remove Redundancy... +action.pairwise_alignment = Pairwise Alignment +action.by_rna_helixes = By RNA Helices action.user_defined = User Defined... action.by_conservation = By Conservation action.wrap = Wrap @@ -80,7 +82,7 @@ action.by_tree_order = By Tree Order action.sort = Sort action.calculate_tree = Calculate Tree action.help = Help -action.by_annotation = by Annotation... +action.by_annotation = By Annotation... action.invert_sequence_selection = Invert Sequence Selection action.invert_column_selection = Invert Column Selection action.show = Show @@ -102,11 +104,12 @@ action.find_all = Find all action.find_next = Find next action.file = File action.view = View +action.annotations = Annotations action.change_params = Change Parameters action.apply = Apply action.apply_threshold_all_groups = Apply threshold to all groups action.apply_all_groups = Apply to all Groups -action.by_chain = By chain +action.by_chain = By Chain action.by_sequence = By Sequence action.paste_annotations = Paste Annotations action.format = Format @@ -115,10 +118,10 @@ action.new_view = New View action.close = Close action.add = Add action.save_as_default = Save as default -action.save_as = Save as +action.save_as = Save as... action.save = Save action.cancel_fetch = Cancel Fetch -action.save_omit_hidden_columns = Save / Omit Hidden Columns +action.save_omit_hidden_columns = Save / Omit Hidden Regions action.change_font = Change Font action.change_font_tree_panel = Change Font (Tree Panel) action.colour = Colour @@ -199,8 +202,10 @@ label.average_distance_bloslum62 = Average Distance Using BLOSUM62 label.neighbour_blosum62 = Neighbour Joining Using BLOSUM62 label.show_annotations = Show annotations label.hide_annotations = Hide annotations -label.show_all_annotations = Show all annotations -label.hide_all_annotations = Hide all annotations +label.show_all_seq_annotations = Show sequence related +label.hide_all_seq_annotations = Hide sequence related +label.show_all_al_annotations = Show alignment related +label.hide_all_al_annotations = Hide alignment related label.hide_all = Hide all label.add_reference_annotations = Add reference annotations label.find_tip = Search alignment, selection or sequence ids for a subsequence (ignoring gaps).
Accepts regular expressions - search Help for 'regex' for details. @@ -211,6 +216,7 @@ label.none = None label.above_identity_threshold = Above Identity Threshold label.show_sequence_features = Show Sequence Features label.nucleotide = Nucleotide +label.protein = Protein label.to_new_alignment = To New Alignment label.to_this_alignment = Add To This Alignment label.apply_colour_to_all_groups = Apply Colour To All Groups @@ -222,15 +228,19 @@ label.automatic_scrolling = Automatic Scrolling label.documentation = Documentation label.about = About... label.show_sequence_limits = Show Sequence Limits -label.feature_settings = Feature Settings... -label.sequence_features = Sequence Features +action.feature_settings = Feature Settings... +label.feature_settings = Feature Settings label.all_columns = All Columns label.all_sequences = All Sequences label.selected_columns = Selected Columns label.selected_sequences = Selected Sequences +label.except_selected_sequences = All except selected sequences label.all_but_selected_region = All but Selected Region (Shift+Ctrl+H) label.selected_region = Selected Region label.all_sequences_columns = All Sequences and Columns +label.hide_insertions = Hide columns gapped for selection +label.hide_selected_annotations = Hide selected annotations +label.show_selected_annotations = Show selected annotations label.group_consensus = Group Consensus label.group_conservation = Group Conservation label.show_consensus_histogram = Show Consensus Histogram @@ -238,6 +248,18 @@ label.show_consensus_logo = Show Consensus Logo label.norm_consensus_logo = Normalise Consensus Logo label.apply_all_groups = Apply to all groups label.autocalculated_annotation = Autocalculated Annotation +label.show_first = Show first +label.show_last = Show last +label.struct_from_pdb = Process secondary structure from PDB +label.use_rnaview = Use RNAView for secondary structure +label.autoadd_secstr = Add secondary structure annotation to alignment +label.autoadd_temp = Add Temperature Factor annotation to alignment +label.structure_viewer = Default structure viewer +label.chimera_path = Path to Chimera program +label.chimera_path_tip = Jalview will first try any path entered here, else standard installation locations.
Double-click to browse for file. +label.invalid_chimera_path = Chimera path not found or not executable +label.chimera_missing = Chimera structure viewer not found.
Please enter the path to Chimera (if installed),
or download and install UCSF Chimera. +label.chimera_failed = Error opening Chimera - is it installed?\nCheck path in Preferences, Structure label.min_colour = Minimum Colour label.max_colour = Maximum Colour label.use_original_colours = Use Original Colours @@ -321,8 +343,8 @@ label.blog_item_published_on_date = {0} {1} label.select_das_service_from_table = Select a DAS service from the table to read a full description here. label.session_update = Session Update label.new_vamsas_session = New Vamsas Session -label.load_vamsas_session = Load Vamsas Session -label.save_vamsas_session = Save Vamsas Session +action.load_vamsas_session = Load Vamsas Session... +action.save_vamsas_session = Save Vamsas Session label.select_vamsas_session_opened_as_new_vamsas_session= Select a vamsas session to be opened as a new vamsas session. label.open_saved_vamsas_session = Open a saved VAMSAS session label.groovy_console = Groovy Console... @@ -331,7 +353,7 @@ label.dont_ask_me_again = Don't ask me again label.select_eps_character_rendering_style = Select EPS character rendering style label.invert_selection = Invert Selection label.optimise_order = Optimise Order -label.seq_sort_by_score = Seq sort by Score +label.seq_sort_by_score = Sequence sort by Score label.load_colours = Load Colours label.save_colours = Save Colours label.fetch_das_features = Fetch DAS Features @@ -341,7 +363,7 @@ label.example = Example label.example_param = Example: {0} label.select_file_format_before_saving = You must select a file format before saving! label.file_format_not_specified = File format not specified -label.alignment_contains_hidden_columns = The Alignment contains hidden columns.\nDo you want to save only the visible alignment? +label.alignment_contains_hidden_columns = The Alignment contains hidden regions (hidden sequences/columns).\nDo you want to save only the visible alignment? label.couldnt_save_file = Couldn't save file: {0} label.error_saving_file = Error Saving File label.remove_from_default_list = Remove from default list? @@ -366,6 +388,7 @@ label.automatically_associate_pdb_files_with_sequences_same_name = Do you want t label.automatically_associate_pdb_files_by_name = Automatically Associate PDB files by name label.ignore_unmatched_dropped_files_info = Do you want to ignore the {0} files whose names did not match any sequence IDs ? label.ignore_unmatched_dropped_files = Ignore unmatched dropped files? +label.view_name_original = Original label.enter_view_name = Enter View Name label.enter_label = Enter label label.enter_label_for_the_structure = Enter a label for the structure? @@ -373,7 +396,7 @@ label.pdb_entry_is_already_displayed = {0} is already displayed.\nDo you want to label.map_sequences_to_visible_window = Map Sequences to Visible Window: {0} label.add_pdbentry_to_view = Do you want to add {0} to the view called\n{1}\n label.align_to_existing_structure_view = Align to existing structure view -label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease try downloading them manually. +label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease retry, or try downloading them manually. label.couldnt_load_file = Couldn't load file label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure. label.no_pdb_id_in_file = No PDB Id in File @@ -411,6 +434,7 @@ label.input_cut_paste = Cut & Paste Input label.input_cut_paste_params = Cut & Paste Input - {0} label.alignment_output_command = Alignment output - {0} label.annotations = Annotations +label.structure_options = Structure Options label.features = Features label.overview_params = Overview {0} label.paste_newick_file = Paste Newick file @@ -424,8 +448,8 @@ label.redundancy_threshold_selection = Redundancy threshold selection label.user_defined_colours = User defined colours label.jalviewLite_release = JalviewLite - Release {0} label.jaview_build_date = Build date: {0} -label.jalview_authors_1 = Authors: : Jim Procter, Andrew Waterhouse, Lauren Lui, Jan Engelhardt, Natasha Sherstnev, -label.jalview_authors_2 = Daniel Barton, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton. +label.jalview_authors_1 = Authors: Jim Procter, Andrew Waterhouse, Mungo Carstairs, Tochukwu Ofoegbu, Lauren Lui, Jan Engelhardt, +label.jalview_authors_2 = Natasha Sherstnev, Daniel Barton, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton. label.jalview_dev_managers = Development managed by The Barton Group, University of Dundee, Scotland, UK. label.jalview_distribution_lists = For help, see the FAQ at www.jalview.org and/or join the jalview-discuss@jalview.org mailing list label.jalview_please_cite = If you use Jalview, please cite: @@ -459,26 +483,31 @@ label.fetching_pdb_data = Fetching PDB data... label.structure_type = Structure type label.settings_for_type = Settings for {0} label.view_full_application = View in Full Application -label.load_associated_tree = Load Associated Tree ... -label.load_features_annotations = Load Features/Annotations ... -label.export_features = Export Features -label.export_annotations = Export Annotations -label.jalview_copy = Copy (Jalview Only) -label.jalview_cut = Cut (Jalview Only) +label.load_associated_tree = Load Associated Tree... +label.load_features_annotations = Load Features/Annotations... +label.export_features = Export Features... +label.export_annotations = Export Annotations... label.to_upper_case = To Upper Case label.to_lower_case = To Lower Case label.toggle_case = Toggle Case -label.edit_name_description = Edit Name/Description ... -label.create_sequence_feature = Create Sequence Feature ... +label.edit_name_description = Edit Name/Description... +label.create_sequence_feature = Create Sequence Feature... label.edit_sequence = Edit Sequence label.edit_sequences = Edit Sequences label.sequence_details = Sequence Details label.jmol_help = Jmol Help +label.chimera_help = Chimera Help +label.close_viewer = Close Viewer +label.confirm_close_chimera = This will close Jalview''s connection to {0}.
Do you want to close the Chimera window as well? +label.chimera_help = Chimera Help label.all = All -label.sort_by = Sort by +label.sort_by = Sort alignment by label.sort_by_score = Sort by Score label.sort_by_density = Sort by Density label.sequence_sort_by_density = Sequence sort by Density +label.sort_ann_by = Sort annotations by +label.sort_annotations_by_sequence = Sort by sequence +label.sort_annotations_by_label = Sort by label label.reveal = Reveal label.hide_columns = Hide Columns label.load_jalview_annotations = Load Jalview Annotations or Features File @@ -498,7 +527,7 @@ label.toggle_absolute_relative_display_threshold = Toggle between absolute and r label.display_features_same_type_different_label_using_different_colour = Display features of the same type with a different label using a different colour. (e.g. domain features) label.select_colour_minimum_value = Select Colour for Minimum Value label.select_colour_maximum_value = Select Colour for Maximum Value -label.open_new_jmol_view_with_all_structures_associated_current_selection_superimpose_using_alignment = Open a new Jmol view with all structures associated with the current selection and superimpose them using the alignment. +label.open_new_jmol_view_with_all_structures_associated_current_selection_superimpose_using_alignment = Open a new structure viewer with all structures associated with the current selection and superimpose them using the alignment. label.open_url_param = Open URL {0} label.open_url_seqs_param = Open URL ({0}..) ({1} seqs) label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0} @@ -507,7 +536,10 @@ label.dark_colour = Dark Colour label.light_colour = Light Colour label.highlightnode = Left click to select leaves.
Double-click to invert leaves.
Right click to change colour. label.load_colour_scheme = Load colour scheme +label.copy_format_from = Copy format from label.toggle_enabled_views = When enabled, allows many views to be selected. +label.select_all_views = Select all views +label.select_many_views = Select many views label.edit_notes_parameter_set = Click to edit the notes for this parameter set. label.open_local_file = Open local file label.enable_automatically_sort_alignment_when_open_new_tree = Enable this to automatically sort
the alignment when you open
a new tree. @@ -531,7 +563,8 @@ label.from_textbox = from Textbox label.window = Window label.preferences = Preferences label.tools = Tools -label.fetch_sequences = Fetch Sequence(s) +label.fetch_sequences = Fetch Sequences +action.fetch_sequences = Fetch Sequences... label.stop_vamsas_session = Stop Vamsas Session label.collect_garbage = Collect Garbage label.show_memory_usage = Show Memory Usage @@ -547,12 +580,13 @@ label.conservation = Conservation label.consensus = Consensus label.histogram = Histogram label.logo = Logo -label.non_positional_features = Non-positional Features -label.database_references = Database References +label.non_positional_features = List Non-positional Features +label.database_references = List Database References label.share_selection_across_views = Share selection across views label.scroll_highlighted_regions = Scroll to highlighted regions label.gap_symbol = Gap Symbol -label.alignment_colour = Alignment Colour +label.prot_alignment_colour = Protein Alignment Colour +label.nuc_alignment_colour = Nucleotide Alignment Colour label.address = Address label.port = Port label.default_browser_unix = Default Browser (Unix) @@ -573,7 +607,7 @@ label.figure_id_column_width = Figure ID column width label.use_modeller_output = Use Modeller Output label.wrap_alignment = Wrap Alignment label.right_align_ids = Right Align Ids -label.sequence_name_italics = Sequence Name Italics +label.sequence_name_italics = Italic Sequence Ids label.open_overview = Open Overview label.default_colour_scheme_for_alignment = Default Colour Scheme for alignment label.annotation_shading_default = Annotation Shading Default @@ -587,6 +621,7 @@ label.das_settings = DAS Settings label.web_services = Web Services label.right_click_to_edit_currently_selected_parameter = Right click to edit currently selected parameter. label.let_jmol_manage_structure_colours = Let Jmol manage structure colours +label.let_chimera_manage_structure_colours = Let Chimera manage structure colours label.marks_leaves_tree_not_associated_with_sequence = Marks leaves of tree not associated with a sequence label.index_web_services_menu_by_host_site = Index web services in menu by the host site label.option_want_informed_web_service_URL_cannot_be_accessed_jalview_when_starts_up = Check this option if you want to be informed
when a web service URL cannot be accessed by Jalview
when it starts up @@ -629,24 +664,28 @@ label.cancel_job_close_dialog = Close this dialog and cancel job label.input_output = Input/Output label.cut_paste = Cut'n'Paste label.adjusting_parameters_for_calculation = Adjusting parameters for existing Calculation -label.2d_rna_structure_line = 2D RNA {0} +label.2d_rna_structure_line = 2D RNA {0} (alignment) label.2d_rna_sequence_name = 2D RNA - {0} label.edit_name_and_description_current_group = Edit name and description of current group. label.view_structure_for = View structure for {0} label.view_all_structures = View all {0} structures. label.view_all_representative_structures = View all {0} representative structures. -label.open_new_jmol_view_with_all_representative_structures_associated_current_selection_superimpose_using_alignment = Opens a new Jmol view with all representative structures\nassociated with the current selection\nsuperimposed with the current alignment. +label.open_new_jmol_view_with_all_representative_structures_associated_current_selection_superimpose_using_alignment = Opens a new structure viewer with all representative structures\nassociated with the current selection\nsuperimposed with the current alignment. label.associate_structure_with_sequence = Associate Structure with Sequence -label.from_file = from file +label.from_file = From File label.enter_pdb_id = Enter PDB Id -label.discover_pdb_ids = Discover PDB ids +label.discover_pdb_ids = Discover PDB IDs label.text_colour = Text Colour +action.set_text_colour = Text Colour... label.structure = Structure label.view_structure = View Structure +label.view_protein_structure = View Protein Structure +label.show_pdbstruct_dialog = 3D Structure Data... +label.view_rna_structure = VARNA 2D Structure label.clustalx_colours = Clustalx colours label.above_identity_percentage = Above % Identity label.create_sequence_details_report_annotation_for = Annotation for {0} -label.sequece_details_for = Sequece Details for {0} +label.sequence_details_for = Sequence Details for {0} label.sequence_name = Sequence Name label.sequence_description = Sequence Description label.edit_sequence_name_description = Edit Sequence Name/Description @@ -664,40 +703,46 @@ label.save_png_image = Save As PNG Image label.load_tree_for_sequence_set = Load a tree for this sequence set label.export_image = Export Image label.vamsas_store = VAMSAS store -label.translate_cDNA = Translate cDNA +label.translate_cDNA = Translate as cDNA +label.linked_view_title = Linked cDNA and protein view +label.align = Align label.extract_scores = Extract Scores -label.get_cross_refs = Get Cross References +label.get_cross_refs = Get Cross-References label.sort_alignment_new_tree = Sort Alignment With New Tree label.add_sequences = Add Sequences label.new_window = New Window +label.split_window = Split Window label.refresh_available_sources = Refresh Available Sources label.use_registry = Use Registry label.add_local_source = Add Local Source label.set_as_default = Set as Default label.show_labels = Show labels label.background_colour = Background Colour +action.background_colour = Background Colour... label.associate_nodes_with = Associate Nodes With label.jalview_pca_calculation = Jalview PCA Calculation label.link_name = Link Name label.pdb_file = PDB file label.colour_with_jmol = Colour with Jmol -label.align_structures = Align structures +label.colour_with_chimera = Colour with Chimera +label.align_structures = Align Structures label.jmol = Jmol +label.chimera = Chimera label.sort_alignment_by_tree = Sort Alignment By Tree label.mark_unlinked_leaves = Mark Unlinked Leaves label.associate_leaves_with = Associate Leaves With label.save_colour_scheme_with_unique_name_added_to_colour_menu = Save your colour scheme with a unique name and it will be added to the Colour menu label.case_sensitive = Case Sensitive label.lower_case_colour = Lower Case Colour -label.index_by_host = Index by host -label.index_by_type = Index by type +label.index_by_host = Index by Host +label.index_by_type = Index by Type label.enable_jabaws_services = Enable JABAWS Services -label.display_warnings = Display warnings -label.move_url_up = Move URL up -label.move_url_down = Move URL down -label.add_sbrs_definition = Add a SBRS definition -label.edit_sbrs_definition = Edit SBRS definition -label.delete_sbrs_definition = Delete SBRS definition +label.display_warnings = Display Warnings +label.move_url_up = Move URL Up +label.move_url_down = Move URL Down +label.add_sbrs_definition = Add a SBRS Definition +label.edit_sbrs_definition = Edit SBRS Definition +label.delete_sbrs_definition = Delete SBRS Definition label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases. Some of the ids have been\n altered, most likely the start/end residue will have been updated.\n Save your alignment to maintain the updated id.\n\n label.sequence_names_updated = Sequence names updated label.dbref_search_completed = DBRef search completed @@ -706,7 +751,15 @@ label.fetch_all_param = Fetch all {0} label.paste_new_window = Paste To New Window label.settings_for_param = Settings for {0} label.view_params = View {0} -label.select_all_views = Select all views +label.aacon_calculations = AACon Calculations +label.aacon_settings = Change AACon Settings... +tooltip.aacon_calculations = When checked, AACon calculations are updated automatically. +tooltip.aacon_settings = Modify settings for AACon calculations. +label.rnalifold_calculations = RNAAliFold Prediction +label.rnalifold_settings = Change RNAAliFold settings... +tooltip.rnalifold_calculations = When checked, RNA secondary structure predictions will be calculated for the alignment, and updated when edits are made. +tooltip.rnalifold_settings = Modify settings for the RNAAliFold prediction. Use this to hide or show different results of the RNA calculation, and change RNA folding parameters. +label.all_views = All Views label.align_sequences_to_existing_alignment = Align sequences to an existing alignment label.realign_with_params = Realign with {0} label.calcname_with_default_settings = {0} with Defaults @@ -731,7 +784,9 @@ label.transformed_points_for_params = Transformed points for {0} label.graduated_color_for_params = Graduated Feature Colour for {0} label.select_backgroud_colour = Select Background Colour label.invalid_font = Invalid Font -label.separate_multiple_accession_ids = Separate multiple accession ids with semi colon ";" +label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";" +label.separate_multiple_query_values = Enter one or more {0}s separated by a semi-colon ";" +label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This Searches the entire PDB database) label.replace_commas_semicolons = Replace commas with semi-colons label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0} label.parsing_failed_unrecoverable_exception_thrown_param = \nParsing failed. An unrecoverable exception was thrown\:\n {0} @@ -748,13 +803,14 @@ label.use_sequence_id_1 = Use $SEQUENCE_ID$ or $SEQUENCE_ID=//=$ label.use_sequence_id_2 = \nto embed sequence id in URL label.ws_parameters_for = Parameters for {0} label.switch_server = Switch server -label.open_jabaws_web_page = Opens the JABAWS server's homepage in web browser label.choose_jabaws_server = Choose a server for running this service label.services_at = Services at {0} label.rest_client_submit = {0} using {1} label.fetch_retrieve_from =Retrieve from {0} label.fetch_retrieve_from_all_sources = Retrieve from all {0} sources in {1}
First is :{2} -label.feature_settings_click_drag = Click/drag feature types up or down to change render order.
Double click to select columns containing feature in alignment/current selection
Pressing Alt will select columns outside features rather than inside
Pressing Shift to modify current selection (rather than clear current selection)
Press CTRL or Command/Meta to toggle columns in/outside features
+#label.feature_settings_click_drag = Click/drag feature types up or down to change render order.
Double click to select columns containing feature in alignment/current selection
Pressing Alt will select columns outside features rather than inside
Pressing Shift to modify current selection (rather than clear current selection)
Press CTRL or Command/Meta to toggle columns in/outside features
+label.feature_settings_click_drag = Drag up or down to change render order.
Double click to select columns containing feature. +label.transparency_tip = Adjust transparency to 'see through' feature colours. label.opt_and_params_further_details = see further details by right-clicking label.opt_and_params_show_brief_desc_image_link = Click to show brief description
Right click for further information. label.opt_and_params_show_brief_desc = Click to show brief description
@@ -769,7 +825,7 @@ label.service_preset = Service Preset label.run_with_preset = Run {0} with preset label.view_service_doc_url = View {1} label.submit_sequence = Submit {0} {1} {2} {3} to
{4} -action.by_title_param = by {0} +action.by_title_param = By {0} label.alignment = Alignment label.secondary_structure_prediction = Secondary Structure Prediction label.sequence_database_search = Sequence Database Search @@ -777,7 +833,7 @@ label.analysis = Analysis label.protein_disorder = Protein Disorder label.source_from_db_source = Sources from {0} label.from_msname = from {0} -label.superpose_with = Superpose with ... +label.superpose_with = Superpose with action.do = Do label.scale_label_to_column = Scale Label to Column label.add_new_row = Add New Row @@ -822,7 +878,7 @@ label.service_url = Service URL label.copied_sequences = Copied sequences label.cut_sequences = Cut Sequences label.conservation_colour_increment = Conservation Colour Increment ({0}) -label.percentage_identity_thereshold = Percentage Identity Thereshold ({0}) +label.percentage_identity_thereshold = Percentage Identity Threshold ({0}) label.error_unsupported_owwner_user_colour_scheme = Unsupported owner for User Colour scheme dialog label.save_alignment_to_file = Save Alignment to file label.save_features_to_file = Save Features to File @@ -1068,6 +1124,7 @@ warn.job_cannot_be_cancelled_close_window = This job cannot be cancelled.\nJust warn.service_not_supported = Service not supported! warn.input_is_too_big = Input is too big! warn.invalid_job_param_set = Invalid job parameter set! +warn.oneseq_msainput_selection = The current selection only contains a single sequence. Do you want to submit all sequences for alignment instead ? info.job_couldnt_be_run_server_doesnt_support_program = Job could not be run because the server doesn't support this program.\n{0} info.job_couldnt_be_run_exceeded_hard_limit = Job could not be run because it exceeded a hard limit on the server.\n{0} info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service\!\n @@ -1077,6 +1134,8 @@ info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JNet job result data\!\n{2} info.failed_to_submit_sequences_for_alignment = Failed to submit sequences for alignment.\nIt is most likely that there is a problem with the server.\nJust close the window\n info.alignment_object_method_notes = \nAlignment Object Method Notes\n info.server_exception = \n{0} Server exception\!\n{1} +info.invalid_msa_input_mininfo = Need at least two sequences with at least 3 residues each, with no hidden regions between them. +info.invalid_msa_notenough = Not enough sequence data to align status.processing_commandline_args = Processing commandline arguments... status.das_features_being_retrived = DAS features being retrieved... status.searching_for_sequences_from = Searching for sequences from {0} @@ -1084,7 +1143,7 @@ status.finished_searching_for_sequences_from = Finished searching for sequences label.eps_file = EPS file label.png_image = PNG image status.saving_file = Saving {0} -status.export_complete = Export complete. +status.export_complete = {0} Export completed. status.fetching_pdb = Fetching PDB {0} status.refreshing_news = Refreshing news status.importing_vamsas_session_from = Importing VAMSAS session from {0} @@ -1102,7 +1161,12 @@ status.no_das_sources_active = No DAS Sources Active status.das_feature_fetching_cancelled = DAS Feature Fetching Cancelled status.das_feature_fetching_complete = DAS Feature Fetching Complete status.fetching_db_refs = Fetching db refs +status.loading_cached_pdb_entries = Loading Cached PDB Entries +status.searching_for_pdb_structures = Searching for PDB Structures +status.opening_file = opening file +status.colouring_chimera = Colouring Chimera label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data +label.font_too_small = Font size is too small label.error_loading_file_params = Error loading file {0} label.error_loading_jalview_file = Error loading Jalview file warn.out_of_memory_when_action = Out of memory when {0}\!\!\nSee help files for increasing Java Virtual Machine memory. @@ -1114,6 +1178,8 @@ label.couldnt_create_sequence_fetcher = Couldn't create SequenceFetcher warn.couldnt_create_sequence_fetcher_client = Could not create the sequence fetcher client. Check error logs for details. warn.server_didnt_pass_validation = Service did not pass validation.\nCheck the Jalview Console for more details. warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$ or a regex $SEQUENCE_ID=//=$ +warn.urls_not_contacted = URLs that could not be contacted +warn.urls_no_jaba = URLs without any JABA Services info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results) label.test_server = Test Server? info.you_want_jalview_to_find_uniprot_accessions = Do you want Jalview to find\nUniprot Accession ids for given sequence names? @@ -1127,10 +1193,95 @@ label.edit_jabaws_url = Edit JABAWS URL label.add_jabaws_url = Add new JABAWS URL label.news_from_jalview = News from http://www.jalview.org label.cut_paste_alignmen_file = Cut & Paste Alignment File -label.enter_redundancy_thereshold = Enter the redundancy thereshold +label.enter_redundancy_thereshold = Enter the redundancy threshold label.select_dark_light_set_thereshold = Select a dark and light text colour, then set the threshold to
switch between colours, based on background colour label.select_feature_colour = Select Feature Colour label.delete_all = Delete all sequences warn.delete_all = Deleting all sequences will close the alignment window.
Confirm deletion or Cancel. label.add_annotations_for = Add annotations for -label.choose_annotations = Choose annotations +action.choose_annotations = Choose Annotations... +label.choose_annotations = Choose Annotations +label.find = Find +label.invalid_search = Search string invalid +error.invalid_regex = Invalid regular expression +label.ignore_gaps_consensus = Ignore Gaps In Consensus +label.show_group_histogram = Show Group Histogram +label.show_group_logo = Show Group Logo +label.normalise_group_logo = Normalise Group Logo +label.show_histogram = Show Histogram +label.show_logo = Show Logo +label.normalise_logo = Normalise Logo +label.no_colour_selection_in_scheme = Please make a colour selection before applying colour scheme +label.no_colour_selection_warn = Error saving colour scheme +label.open_split_window? = Would you like to open as a split window, with cDNA and protein linked? +label.open_split_window = Open split window +label.no_mappings = No mappings found +action.no = No +action.yes = Yes +label.for = for +label.select_by_annotation = Select/Hide Columns by Annotation +action.select_by_annotation = Select/Hide Columns by Annotation... +label.threshold_filter = Threshold Filter +action.hide = Hide +action.select = Select +label.alpha_helix = Alpha Helix +label.beta_strand = Beta Strand +label.turn = Turn +label.select_all = Select All +label.structures_filter = Structures Filter +label.search_filter = Search Filter +label.description = Description +label.include_description= Include Description +action.back = Back +label.hide_insertions = Hide Insertions +label.mark_as_representative = Mark as representative +label.open_jabaws_web_page = Open JABAWS web page +label.opens_the_jabaws_server_homepage = Opens the JABAWS server's homepage in web browser +label.pdb_sequence_getcher = PDB Sequence Fetcher +label.result = result +label.results = results +label.structure_chooser = Structure Chooser +label.select = Select : +label.invert = Invert +label.select_pdb_file = Select PDB File +info.select_filter_option = Select Filter Option/Manual Entry +info.associate_wit_sequence = Associate with Sequence +label.search_result = Search Result +label.found_structures_summary = Found Structures Summary +label.configure_displayed_columns = Configure Displayed Columns +label.start_jalview = Start Jalview +label.biojs_html_export = BioJS +label.scale_as_cdna = Scale protein residues to codons +label.scale_protein_to_cdna = Scale Protein to cDNA +label.scale_protein_to_cdna_tip = Make protein residues same width as codons in split frame views +info.select_annotation_row = Select Annotation Row +info.enter_search_text_here = Enter Search Text Here +info.enter_search_text_to_enable = Enter Search Text to Enable +info.search_in_annotation_label = Search in {0} Label +info.search_in_annotation_description = Search in {0} Description +info.change_threshold_mode_to_enable = Change Threshold Mode to Enable +label.couldnt_read_data = Couldn't read data +label.embbed_biojson = Embed BioJSON to HTML export +action.export_groups = Export Groups +action.export_annotations = Export Annotations +action.export_hidden_columns = Export Hidden Columns +action.export_hidden_sequences = Export Hidden Sequences +action.export_features = Export Features +label.export_settings = Export Settings +label.save_as_biojs_html = Save as BioJs HTML +label.pdb_web-service_error = PDB Web-service Error +label.structure_chooser_manual_association = Structure Chooser - Manual association +label.structure_chooser_filter_time = Structure Chooser - Filter time ({0}) +label.structure_chooser_no_of_structures = Structure Chooser - {0} Found ({1}) +info.no_pdb_entry_found_for = No PDB entry found for {0} +exception.unable_to_detect_internet_connection = Jalview is unable to detect an internet connection +exception.pdb_rest_service_no_longer_available = PDB rest services no longer available! +exception.resource_not_be_found = The requested resource could not be found +exception.pdb_server_error = There seems to be an error from the PDB server +exception.pdb_server_unreachable = Jalview is unable to reach the PDBe Solr server. \nPlease ensure that you are connected to the internet and try again. +label.nw_mapping = Needleman & Wunsch Alignment +label.sifts_mapping = SIFTs Mapping +label.mapping_method = Sequence \u27f7 Structure mapping method +status.waiting_for_user_to_select_output_file = Waiting for user to select {0} file. +status.cancelled_image_export_operation = Cancelled {0} export operation. +info.error_creating_file = Error creating {0} file. \ No newline at end of file