X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=resources%2FscoreModel%2Fblosum62.scm;h=b793e04c6ba7378f031b3b0f9596c9e98602513e;hb=613a7a5d1fe2758f0bb620e49eeb87fa45b5458f;hp=2ea333c41b29db765865fa1dde7142a94e7c30cb;hpb=c822c1949e3c8f3b2b59f89acb54bc135fe6fa77;p=jalview.git

diff --git a/resources/scoreModel/blosum62.scm b/resources/scoreModel/blosum62.scm
index 2ea333c..b793e04 100644
--- a/resources/scoreModel/blosum62.scm
+++ b/resources/scoreModel/blosum62.scm
@@ -1,18 +1,14 @@
 ScoreMatrix BLOSUM62
-ARNDCQEGHILKMFPSTWYVBZX *
+ARNDCQEGHILKMFPSTWYVBZX-*
 #
 # The BLOSUM62 substitution matrix, as at https://www.ncbi.nlm.nih.gov/Class/FieldGuide/BLOSUM62.txt
 # The first line declares a ScoreMatrix with the name BLOSUM62 (shown in menus)
-# The second line gives the symbols for which scores are held in the matrix
-# These may include a space (but not as the first or last character)
 #
 # Scores are not symbol case sensitive, unless column(s) are provided for lower case characters
 # The 'guide symbol' at the start of each row of score values is optional
-#
-# Header line with symbols may be provided as a guide
 # Values may be integer or floating point, delimited by tab, space, comma or combinations
 #
-	A	R	N	D	C	Q	E	G	H	I	L	K	M	F	P	S	T	W	Y	V	B	Z	X	    *
+	A	R	N	D	C	Q	E	G	H	I	L	K	M	F	P	S	T	W	Y	V	B	Z	X	-   *
 #
 A	4	-1	-2	-2	0	-1	-1	0	-2	-1	-1	-1	-1	-2	-1	1	0	-3	-2	0	-2	-1	0	-4 -4
 R	-1	5	0	-2	-3	1	0	-2	0	-3	-2	2	-1	-3	-2	-1	-1	-3	-2	-3	-1	0	-1	-4 -4
@@ -37,7 +33,7 @@ V	0	-3	-3	-3	-1	-2	-2	-3	-3	3	1	-2	1	-1	-2	-2	0	-3	-1	4	-3	-2	-1	-4 -4
 B	-2	-1	3	4	-3	0	1	-1	0	-3	-4	0	-3	-3	-2	0	-1	-4	-3	-3	4	1	-1	-4 -4
 Z	-1	0	0	1	-3	3	4	-2	0	-3	-3	1	-1	-3	-1	0	-1	-3	-2	-2	1	4	-1	-4 -4
 X	0	-1	-1	-1	-2	-1	-1	-1	-1	-1	-1	-1	-1	-1	-2	0	0	-2	-1	-1	-1	-1	-1	-4 -4
-	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	1  1
+-	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	1  1
 *	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	-4	1  1
 #
 #	A	R	N	D	C	Q	E	G	H	I	L	K	M	F	P	S	T	W	Y	V	B	Z	X	*