X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=runner%2Fcompbio%2Fpipeline%2F_jpred%2FHit.java;fp=runner%2Fcompbio%2Fpipeline%2F_jpred%2FHit.java;h=c8351d91cf52eaf9a6834f1775c00a668a429b84;hb=3ce02f963043c66aedd16f12c789592e86149398;hp=0000000000000000000000000000000000000000;hpb=535359a3d592ee41bda72e7356f0181f6cee9d07;p=jabaws.git

diff --git a/runner/compbio/pipeline/_jpred/Hit.java b/runner/compbio/pipeline/_jpred/Hit.java
new file mode 100644
index 0000000..c8351d9
--- /dev/null
+++ b/runner/compbio/pipeline/_jpred/Hit.java
@@ -0,0 +1,61 @@
+/**
+ * 
+ */
+package compbio.pipeline._jpred;
+
+import java.util.Comparator;
+
+public class Hit {
+    String name;
+    String number;
+    String accession;
+    String seq;
+    String evalue;
+
+    @Override
+    public String toString() {
+	return "accession=" + accession + ", name=" + name + ", num=" + number
+		+ ", evalue=" + evalue + "\n"; // + ", seq=" + seq +
+    }
+
+    @Override
+    public int hashCode() {
+	final int prime = 31;
+	int result = 1;
+	result = prime * result + ((name == null) ? 0 : name.hashCode());
+	return result;
+    }
+
+    @Override
+    public boolean equals(Object obj) {
+	if (this == obj)
+	    return true;
+	if (obj == null)
+	    return false;
+	if (getClass() != obj.getClass())
+	    return false;
+	Hit other = (Hit) obj;
+	if (name == null) {
+	    if (other.name != null)
+		return false;
+	} else if (!name.equals(other.name))
+	    return false;
+	return true;
+    }
+
+    public static final class NumberComporator implements Comparator<Hit> {
+	@Override
+	public int compare(Hit o1, Hit o2) {
+	    return Integer.valueOf(o1.number).compareTo(
+		    Integer.valueOf(o2.number));
+	}
+    }
+
+    public static final class EvalueComporator implements Comparator<Hit> {
+	@Override
+	public int compare(Hit o1, Hit o2) {
+	    return Double.valueOf(o1.evalue).compareTo(
+		    Double.valueOf(o2.evalue));
+	}
+    }
+}
\ No newline at end of file