X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=runner%2Fcompbio%2Frunner%2FUtil.java;h=47f169baaa22981ebac848bd92b5bbe9df9cd419;hb=021b24f125d8b1e8390e99b4a835469dabdd7be1;hp=bfced2a338e38de4da64782eeb08ca88f7b9b51c;hpb=b0423691d9a44eae86799ad242c4fea58f9acd8d;p=jabaws.git

diff --git a/runner/compbio/runner/Util.java b/runner/compbio/runner/Util.java
index bfced2a..47f169b 100644
--- a/runner/compbio/runner/Util.java
+++ b/runner/compbio/runner/Util.java
@@ -37,53 +37,19 @@ import compbio.engine.client.ConfExecutable;
 import compbio.engine.client.ConfiguredExecutable;
 import compbio.engine.client.Executable;
 import compbio.engine.conf.PropertyHelperManager;
-import compbio.metadata.LimitsManager;
 import compbio.metadata.PresetManager;
 import compbio.metadata.RunnerConfig;
 import compbio.util.PropertyHelper;
 
 public final class Util {
 
-	private static Logger log = Logger.getLogger(Util.class);
+	public static Logger log = Logger.getLogger(Util.class);
 
 	private static final PropertyHelper ph = PropertyHelperManager
 			.getPropertyHelper();
 
 	public static final String SPACE = " ";
 
-	/**
-	 * For now just assume that all parameters which came in needs setting it
-	 * will be a client responsibility to prepare RunnerConfig object then
-	 * 
-	 * @param rconfig
-	 * @return
-	 * 
-	 *         public static List<String> toOptionString(RunnerConfig<?>
-	 *         rconfig) { String option = ""; List<String> options = new
-	 *         ArrayList<String>(); for (Parameter<?> par :
-	 *         rconfig.getParameters()) { if (par.getPossibleValues().isEmpty())
-	 *         { option = par.getOptionName(); } else { option =
-	 *         par.getOptionName() + "=" + par.getPossibleValues().get(0); } //
-	 *         separate options options.add(option); } return options; }
-	 */
-
-	public static <T> LimitsManager<T> getLimits(Class<Executable<T>> clazz) {
-		LimitsManager<T> limits = null;
-		try {
-			limits = ConfExecutable.getRunnerLimits(clazz);
-		} catch (FileNotFoundException e) {
-			log.warn(
-					"No limits are found for " + clazz + " executable! "
-							+ e.getLocalizedMessage(), e.getCause());
-			// its ok, limit may not be initialized
-		} catch (IOException e) {
-			log.warn("IO exception while attempting to read limits for "
-					+ clazz + " executable! " + e.getLocalizedMessage(),
-					e.getCause());
-		}
-		return limits;
-	}
-
 	public static synchronized <T> RunnerConfig<T> getSupportedOptions(
 			Class<? extends Executable<T>> clazz) {
 		try {