X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=runner%2Fcompbio%2Frunner%2FUtil.java;h=6f0ec09bc576e9475b53ef88e849460be04e68ff;hb=4b647613e686c4edffd44702d86662c6facb2d5a;hp=f9106ca88427059cffcc28af7f747bd1057251bf;hpb=f687d44d69ce305901cc18305332ae07f69c7845;p=jabaws.git

diff --git a/runner/compbio/runner/Util.java b/runner/compbio/runner/Util.java
index f9106ca..6f0ec09 100644
--- a/runner/compbio/runner/Util.java
+++ b/runner/compbio/runner/Util.java
@@ -38,12 +38,13 @@ import java.util.Scanner;
 
 
 
+
 import org.apache.log4j.Logger;
 
 import compbio.data.sequence.Alignment;
 import compbio.data.sequence.ClustalAlignmentUtil;
 import compbio.data.sequence.FastaSequence;
-import compbio.data.sequence.RNAStruct;
+import compbio.data.sequence.RNAStructScoreManager;
 import compbio.data.sequence.Score;
 import compbio.data.sequence.ScoreManager;
 import compbio.data.sequence.Range;
@@ -167,7 +168,7 @@ public final class Util {
 	}
 
 	
-	public static ScoreManager readRNAStruct(String workDirectory,
+	public static RNAStructScoreManager readRNAStruct(String workDirectory,
 			String structFile) throws IOException, FileNotFoundException {
 		
 		assert !compbio.util.Util.isEmpty(workDirectory);