X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=runner%2Fcompbio%2Frunner%2Fmsa%2FTcoffee.java;h=0c76d2146a0115fc4667977d1120c48baf21174a;hb=c97b1954611988b2b1d2e9aeec6e4b0696a0ab66;hp=98b2313585bb0039a0bd4ee7a67e3d4cefc33ea5;hpb=b6814b6b8761dba56f9e5fe34164f783af1aca4f;p=jabaws.git

diff --git a/runner/compbio/runner/msa/Tcoffee.java b/runner/compbio/runner/msa/Tcoffee.java
index 98b2313..0c76d21 100644
--- a/runner/compbio/runner/msa/Tcoffee.java
+++ b/runner/compbio/runner/msa/Tcoffee.java
@@ -1,6 +1,6 @@
-/* Copyright (c) 2009 Peter Troshin
+/* Copyright (c) 2011 Peter Troshin
  *  
- *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0
+ *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 2.0     
  * 
  *  This library is free software; you can redistribute it and/or modify it under the terms of the
  *  Apache License version 2 as published by the Apache Software Foundation
@@ -27,7 +27,6 @@ import org.apache.log4j.Logger;
 
 import compbio.data.sequence.Alignment;
 import compbio.data.sequence.UnknownFileFormatException;
-import compbio.engine.client.ClusterNativeSpecExecutable;
 import compbio.engine.client.CommandBuilder;
 import compbio.engine.client.Executable;
 import compbio.engine.client.PipedExecutable;
@@ -38,9 +37,7 @@ import compbio.runner.Util;
 import compbio.util.PropertyHelper;
 
 public class Tcoffee extends SkeletalExecutable<Tcoffee>
-		implements
-			PipedExecutable<Tcoffee>,
-			ClusterNativeSpecExecutable<Tcoffee> {
+		implements PipedExecutable<Tcoffee> {
 
 	private static Logger log = Logger.getLogger(Tcoffee.class);
 
@@ -131,15 +128,11 @@ public class Tcoffee extends SkeletalExecutable<Tcoffee>
 			int cpunum = SkeletalExecutable.getClusterCpuNum(getType());
 			if (cpunum != 0) {
 				setNCore(cpunum);
-			}
+			} 
 		}
 		return super.getParameters(provider);
 	}
 
-	@Override
-	public String getNativeSpecs() {
-		return getClusterSettings();
-	}
 
 	@SuppressWarnings("unchecked")
 	@Override