X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fdocument.xml;h=b2c3ed1cdb4440070389e923fee430d8ce1f6103;hb=9ea243d3d24380254ef3eb162d6d73551b3edfd0;hp=860934a141c473c369cbdbf82d1af9ce032b5f13;hpb=1b6e5d1b5e248e6c4455f748df970b9fabba4bb4;p=vamsas.git

diff --git a/schemas/document.xml b/schemas/document.xml
index 860934a..b2c3ed1 100644
--- a/schemas/document.xml
+++ b/schemas/document.xml
@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <VamsasDocument xmlns="http://www.vamsas.ac.uk/vamsasDocument"
      xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-     xsi:schemaLocation="http://www.vamsas.ac.uk/vamsasDocument file:/homes/jimp/prj/new-eclipse/VamsasClient/schemas/vamsasDocument.xsd">
+     xsi:schemaLocation="http://www.vamsas.ac.uk/vamsasDocument file:vamsasDocument.xsd">
     <Version>alpha</Version>
     <LockFile>some kind of resolvable session reference.</LockFile>
     <Provenance xmlns="http://www.vamsas.org">
@@ -14,7 +14,7 @@
     </Provenance>
     <VAMSAS xmlns="http://www.vamsas.org"></VAMSAS>
     <VAMSAS xmlns="http://www.vamsas.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.vamsas.org
-        http://www.vamsas.ac.uk/build/VamsasClient/schemas/vamsas.xsd">
+        file:vamsas.xsd">
         <DataSet>
             <Sequence start="1" end="167" dictionary="vamsas:aa" id="a1127235554296">
                 <sequence>KTAIITGGSRGIGKSIAIKLGKLGASIVLNYRNNTDALKNTIRELEDLNINVIAVQGDISNYKECEKIIKAALDKFNGIDILVNNAGITADNLILRMKEEEFDKVIETNLKGTFNCVKHCIPMIKRRYGKIINISSVVGVAGNVGQCNYAAAKAGVIGFTKSLAKEL</sequence>
@@ -53,6 +53,21 @@
                 <name>Q87N22</name>
             </Sequence>
             <Alignment gapChar="-">
+                <AlignmentAnnotation type="recombinationbreakpoint" graph="false">
+                    <seg start="1" end="163" inclusive="false"/>
+                    <annotationElement position="50" after="true">
+                        <description>Topali Breakpoint</description>
+                        <glyph dict="utf8">?</glyph>
+                    </annotationElement>
+                    <Provenance>
+                        <entry>
+                            <User>Jim</User>
+                            <App>topali</App>
+                            <Action>added-by hand</Action>
+                            <Date>2006-09-11</Date>
+                        </entry>
+                    </Provenance>
+                </AlignmentAnnotation>
                 <alignmentSequence start="1" end="167" refid="a1127235554296">
                     <sequence>KTAIITGGSRGIGKSIAIKLGKLGASIVLNYRNNTDALKNTIRELEDLN--INVIAVQGDISNYKECEKIIKAALDKFNG--IDILVNNAGITADNLILRMKEEEFDKVIETNLKGTFNCVKHCIPMIKRRYGKIINISSVVGVAGNVGQCNYAAAKAGVIGFTKSLAKEL</sequence>
                     <name>Q899P0</name>
@@ -119,6 +134,8 @@
         <data>somedata</data>
         <Instance urn="hmm://myInstancetype"><dataReference>some reference</dataReference></Instance>
     </ApplicationData>
-    
+    <Attachment xmlns="http://www.vamsas.org" type="HMMER2/HMM" objectref="a1127235554304" compressed="false">
+        <data></data>
+    </Attachment>
 </VamsasDocument>