X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fjalview.xsd;h=06473bce0427a4b8c74fee99c65a195063d8708f;hb=79912985d2d21c7d456bbd2281ed84fdfe2e99e7;hp=72a327355aab5ff695b59b341095413061e7d130;hpb=e66214d1c10dd62afb50ea6a6e6952ae9cb0cc38;p=jalview.git

diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index 72a3273..06473bc 100755
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -26,6 +26,17 @@
 																<xs:attribute name="ypos" type="xs:int"/>
 																<xs:attribute name="width" type="xs:int"/>
 																<xs:attribute name="height" type="xs:int"/>
+																<xs:attribute name="viewId" type="xs:string" use="optional">
+																	<xs:annotation>
+																		<xs:documentation>additional identifier which properly disambiguates
+																		the structure view from any other view with the same attributes. This is not an ID,
+																		because it is possible to have many references to the same physical structure view
+																		from different sequences in an alignment. A structureState element citing the same
+																		viewId will appear for each instance.</xs:documentation>
+																	</xs:annotation>
+																</xs:attribute>
+																	
+																
 															</xs:extension>
 														</xs:simpleContent>
 													</xs:complexType>
@@ -40,14 +51,14 @@
 						<xs:attribute name="colour" type="xs:int" use="optional"/>
 						<xs:attribute name="start" type="xs:int" use="required"/>
 						<xs:attribute name="end" type="xs:int" use="required"/>
-						<xs:attribute name="id" type="xs:int" use="required"/>
+						<xs:attribute name="id" type="xs:string" use="required"/>
 						<xs:attribute name="hidden" type="xs:boolean"/>
 					</xs:complexType>
 				</xs:element>
 				<xs:element name="JGroup" minOccurs="0" maxOccurs="unbounded">
 					<xs:complexType>
 						<xs:sequence>
-							<xs:element name="seq" type="xs:int" maxOccurs="unbounded"/>
+							<xs:element name="seq" type="xs:string" maxOccurs="unbounded"/>
 						</xs:sequence>
 						<xs:attribute name="start" type="xs:int"/>
 						<xs:attribute name="end" type="xs:int"/>
@@ -114,6 +125,13 @@
 						<xs:attribute name="textCol1" type="xs:int"/>
 						<xs:attribute name="textCol2" type="xs:int"/>
 						<xs:attribute name="textColThreshold" type="xs:int"/>
+						<xs:attribute name="id" type="xs:ID" use="optional">
+							<xs:annotation>
+								<xs:documentation>
+									unique id used by jalview to synchronize between stored and instantiated views
+								</xs:documentation>
+							</xs:annotation>
+						</xs:attribute>
 					</xs:complexType>
 				</xs:element>
 				<xs:element name="UserColours" minOccurs="0" maxOccurs="unbounded">
@@ -143,6 +161,9 @@
 						<xs:attribute name="markUnlinked" type="xs:boolean"/>
 						<xs:attribute name="fitToWindow" type="xs:boolean"/>
 						<xs:attribute name="currentTree" type="xs:boolean"/>
+						<xs:attribute name="id" type="xs:ID" use="optional">
+							<xs:annotation><xs:documentation>Tree ID added for binding tree visualization settings to vamsas document trees in jalview 2.4.1</xs:documentation></xs:annotation>
+						</xs:attribute>
 					</xs:complexType>
 				</xs:element>
 				<xs:element name="FeatureSettings" minOccurs="0">