X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fjalview.xsd;h=5aae6aef60b1163b8f00c31cbe4fca9d5bff6ed0;hb=76cba6f16a2167e7f4c1a8d02afe351108e503b6;hp=65cf2f89e55dd97e6e05fdbd16da4b1d041520f8;hpb=8c4f77adba0521e7dc89dcb77fe2f8b28c62f70d;p=jalview.git
diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index 65cf2f8..5aae6ae 100755
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
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+ additional identifier which properly disambiguates
+ the structure view from any other view with the same attributes. This is not an ID,
+ because it is possible to have many references to the same physical structure view
+ from different sequences in an alignment. A structureState element citing the same
+ viewId will appear for each instance.
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+ Flag set if the alignment panel containing this JSeq should be included in those used to perform a structure superposition (since Jalview 2.7).
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+ Flag set if the alignment panel containing this JSeq should be included in those used to colour its associated sequences in this structureState(since Jalview 2.7).
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+ Flag set if the structure display is coloured by the Jmol state, rather than by one or more linked alignment views.
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+ Optional sequence group ID (only needs to be unique for this alignment)
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+ unique id used by jalview to synchronize between stored and instantiated views
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+ Tree ID added for binding tree visualization settings to vamsas document trees in jalview 2.4.1
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+ Optional minimum colour for graduated feature colour
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+ threshold value for graduated feature colour
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+ threshold type for graduated feature colour
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+ base attributes for windows displayed in Jalview desktop.
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