X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fjalview.xsd;h=adaa3ee8ecd0804efa8c434ddc5d81c6a29de5b2;hb=3537686af2126e6804e35678db0c220c43cf738c;hp=7511ad2f1b4f57561c5122ab93be0fbc1b477a8a;hpb=4d64932654de3f6ffe07db11d18f2d21f558c6e6;p=jalview.git
diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index 7511ad2..adaa3ee 100755
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -36,22 +36,28 @@
-
-
+
+
-
+
-
-
-
-
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+
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+
additional
@@ -110,8 +116,9 @@
-
+
Flag
@@ -140,8 +147,9 @@
-
+
Flag
@@ -172,8 +180,9 @@
-
+
Flag
@@ -200,8 +209,8 @@
-
+
An
@@ -228,66 +237,109 @@
-
-
+
+
- Reference to a viewer showing RNA structure
- for this sequence. Schema supports one viewer showing multiple
- annotations for multiple sequences, though currently only one
- annotation for one sequence (gapped or trimmed) is used
+
+ Reference to a viewer showing
+ RNA structure for this sequence.
+ Schema supports one viewer
+ showing multiple annotations for
+ multiple sequences, though
+ currently only one annotation
+ for one sequence (gapped or
+ trimmed) is used
-
-
-
+
+
- id attribute of Annotation in
- vamsasModel for
- the secondary structure annotation shown
- in the viewer
+
+ id attribute
+ of
+ Annotation
+ in
+ vamsasModel
+ for the
+ secondary
+ structure
+ annotation
+ shown in the
+ viewer
-
+
- if true the RNA structure is shown with gaps, if false without
+
+ if true the
+ RNA
+ structure is
+ shown with
+ gaps, if
+ false
+ without
-
+
- name of the project jar entry that holds
- the VARNA viewer state for the structure
+
+ name of the
+ project jar
+ entry that
+ holds the
+ VARNA viewer
+ state for
+ the
+ structure
-
-
-
+
+
+
- An id unique to the RNA viewer panel
+
+ An id unique to the RNA
+ viewer panel
-
+
- horizontal position of split pane divider
+
+ horizontal position of
+ split pane divider
-
+
- Index of the selected structure in the
- viewer panel
+
+ Index of the selected
+ structure in the viewer
+ panel
@@ -391,6 +443,16 @@
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@@ -434,6 +496,8 @@
use="optional" default="true" />
+
+
@@ -463,6 +527,8 @@
+
+
@@ -488,6 +554,8 @@
+ Set for trees associated with columns of an alignment, sequence or annotation row
+ Refers to annotation row the tree is provided by
@@ -499,6 +567,51 @@
+
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+
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+ endpoints of X, Y and Z axes in that order
+
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@@ -637,5 +750,46 @@
-
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+
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+ parameters that condition a similarity score calculation
+
+
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+
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+
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+ The results of a PCA calculation
+
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