X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fjalview.xsd;h=c21721bf49f4202a6f1d92a01f162eab89a960d1;hb=77887675780b5c0d33bc298095fdc6988de860ba;hp=07dee982439467504808729fe51d4972477f7dd7;hpb=ac5f0c912a1c7819530456bab13942ad3734460b;p=jalview.git

diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index 07dee98..c21721b 100755
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -293,6 +293,11 @@
 									</xs:attribute>
 								</xs:complexType>
 							</xs:element>
+							<xs:element name="hmmerProfile" minOccurs="0" type="xs:string">
+								<xs:annotation>
+									<xs:documentation>name of the project jar entry that holds the HMM file with the profile for the sequence</xs:documentation>
+								</xs:annotation>
+							</xs:element>
 						</xs:sequence>
 						<xs:attribute name="colour" type="xs:int" use="optional" />
 						<xs:attribute name="start" type="xs:int" use="required" />
@@ -463,6 +468,8 @@
 								</xs:documentation>
 							</xs:annotation>
 						</xs:attribute>
+						<xs:attribute name="showComplementFeatures" type="xs:boolean" use="optional" default="false" />
+						<xs:attribute name="showComplementFeaturesOnTop" type="xs:boolean" use="optional" default="false" />
 					</xs:complexType>
 				</xs:element>
 				<xs:element name="UserColours" minOccurs="0" maxOccurs="unbounded">