X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fjalview.xsd;h=cc8b1e9ca9835a311cc7d1fef74c7c6ff78e06b8;hb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;hp=3df295114475d1a83d1739be99c358015d248a38;hpb=a59b6146fab5f59c80b54b5ee60d977c62b15d08;p=jalview.git
diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index 3df2951..cc8b1e9 100755
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
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+ additional identifier which properly disambiguates
+ the structure view from any other view with the same attributes. This is not an ID,
+ because it is possible to have many references to the same physical structure view
+ from different sequences in an alignment. A structureState element citing the same
+ viewId will appear for each instance.
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+ Flag set if the alignment panel containing this JSeq should be included in those used to perform a structure superposition (since Jalview 2.7).
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+ Flag set if the alignment panel containing this JSeq should be included in those used to colour its associated sequences in this structureState(since Jalview 2.7).
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+ Flag set if the structure display is coloured by the Jmol state, rather than by one or more linked alignment views.
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+ Optional sequence group ID (only needs to be unique for this alignment)
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+ unique id used by jalview to synchronize between stored and instantiated views
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+ Tree ID added for binding tree visualization settings to vamsas document trees in jalview 2.4.1
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+ Optional minimum colour for graduated feature colour
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+ threshold value for graduated feature colour
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+ threshold type for graduated feature colour
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+ base attributes for windows displayed in Jalview desktop.
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