X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fjalview.xsd;h=cc8b1e9ca9835a311cc7d1fef74c7c6ff78e06b8;hb=f1cf002d98f35e6d471ebf1af95b37c63cf86d1c;hp=65c74223d73cf00ea097e2a34d82fb2ad238cbb8;hpb=7b16db738774068ff6df6d65acbbd046ecfa446a;p=jalview.git
diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd
index 65c7422..cc8b1e9 100755
--- a/schemas/jalview.xsd
+++ b/schemas/jalview.xsd
@@ -1,146 +1,304 @@
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ additional identifier which properly disambiguates
+ the structure view from any other view with the same attributes. This is not an ID,
+ because it is possible to have many references to the same physical structure view
+ from different sequences in an alignment. A structureState element citing the same
+ viewId will appear for each instance.
+
+
+
+
+
+ Flag set if the alignment panel containing this JSeq should be included in those used to perform a structure superposition (since Jalview 2.7).
+
+
+
+
+
+
+ Flag set if the alignment panel containing this JSeq should be included in those used to colour its associated sequences in this structureState(since Jalview 2.7).
+
+
+
+
+
+ Flag set if the structure display is coloured by the Jmol state, rather than by one or more linked alignment views.
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Optional sequence group ID (only needs to be unique for this alignment)
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ unique id used by jalview to synchronize between stored and instantiated views
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Tree ID added for binding tree visualization settings to vamsas document trees in jalview 2.4.1
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ Optional minimum colour for graduated feature colour
+
+
+ threshold value for graduated feature colour
+
+
+ threshold type for graduated feature colour
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+ base attributes for windows displayed in Jalview desktop.
+
+
+
+
+
+
+
+