X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fjalview.xsd;h=e7cb580ca14931faa45d3deef2e3dfd000825ab4;hb=335e6b12c126bcb6825cd3f66422677db7cd91c7;hp=8588f202987660a143e409ca33d1ed7d9bd8159b;hpb=a01f3d6d4821282f6528b927137d79750fa58e72;p=jalview.git diff --git a/schemas/jalview.xsd b/schemas/jalview.xsd index 8588f20..e7cb580 100755 --- a/schemas/jalview.xsd +++ b/schemas/jalview.xsd @@ -10,6 +10,11 @@ Public License for more details. * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. --> + - - + + - + - - - - - + + + + additional @@ -105,8 +116,9 @@ - + Flag @@ -135,8 +147,9 @@ - + Flag @@ -167,8 +180,9 @@ - + Flag @@ -195,8 +209,8 @@ - + An @@ -223,66 +237,109 @@ - - + + - Reference to a viewer showing RNA structure - for this sequence. Schema supports one viewer showing multiple - annotations for multiple sequences, though currently only one - annotation for one sequence (gapped or trimmed) is used + + Reference to a viewer showing + RNA structure for this sequence. + Schema supports one viewer + showing multiple annotations for + multiple sequences, though + currently only one annotation + for one sequence (gapped or + trimmed) is used - - - + + - id attribute of Annotation in - vamsasModel for - the secondary structure annotation shown - in the viewer + + id attribute + of + Annotation + in + vamsasModel + for the + secondary + structure + annotation + shown in the + viewer - + - if true the RNA structure is shown with gaps, if false without + + if true the + RNA + structure is + shown with + gaps, if + false + without - + - name of the project jar entry that holds - the VARNA viewer state for the structure + + name of the + project jar + entry that + holds the + VARNA viewer + state for + the + structure - - - + + + - An id unique to the RNA viewer panel + + An id unique to the RNA + viewer panel - + - horizontal position of split pane divider + + horizontal position of + split pane divider - + - Index of the selected structure in the - viewer panel + + Index of the selected + structure in the viewer + panel @@ -386,6 +443,16 @@ + + + + + + + + + + @@ -458,6 +525,8 @@ + + @@ -494,6 +563,51 @@ + + + + + + + + + + + + + + + + endpoints of X, Y and Z axes in that order + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -632,5 +746,46 @@ - + + + + parameters that condition a similarity score calculation + + + + + + + + + + + + + + + + The results of a PCA calculation + + + + + + + + + + + + + + + + + + + + + +