X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fvamsas.xsd;h=333a4e4460327a327143b1d8308ce552c70e4178;hb=fa9da54fb97cb2eacb1af7859024d90166bddb8f;hp=22b7aac75111e71bb35d2817f5f7ab8ad52bb6c5;hpb=4d64932654de3f6ffe07db11d18f2d21f558c6e6;p=jalview.git

diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd
index 22b7aac..333a4e4 100755
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
@@ -103,6 +103,11 @@
 							</xs:element>
 						</xs:choice>
 					</xs:sequence>
+					<xs:attribute name="mappingType" type="xs:string" use="optional">
+						<xs:annotation>
+							<xs:documentation>Biotype of the mapping e.g. CdsToPeptide</xs:documentation>
+						</xs:annotation>
+					</xs:attribute>
 				</xs:extension>
 			</xs:complexContent>	
 		</xs:complexType>
@@ -161,6 +166,20 @@
 								<xs:attribute name="source" type="xs:string"/>
 								<xs:attribute name="version" type="xs:string"/>
 								<xs:attribute name="accessionId" type="xs:string"/>
+								<xs:attribute name="locus" type="xs:boolean" default="false">
+									<xs:annotation>
+										<xs:documentation>
+											true for gene locus mapping, source=species, version=assembly, accession=chromosome
+										</xs:documentation>
+									</xs:annotation>
+								</xs:attribute>
+								<xs:attribute name="canonical" type="xs:boolean" default="false">
+									<xs:annotation>
+										<xs:documentation>
+											true for the representative accession for databases where multiple accessions map to the same entry (eg. Uniprot)
+										</xs:documentation>
+									</xs:annotation>
+								</xs:attribute>
 							</xs:complexType>
 						</xs:element>
 					</xs:sequence>
@@ -171,6 +190,13 @@
 							</xs:documentation>
 						</xs:annotation>
 					</xs:attribute>
+					<xs:attribute name="biotype" type="xs:string" use="optional">
+						<xs:annotation>
+							<xs:documentation>
+								Biotype of the sequence (if known)
+							</xs:documentation>
+						</xs:annotation>
+					</xs:attribute>
 				</xs:extension>
 			</xs:complexContent>
 		</xs:complexType>