X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fvamsas.xsd;h=333a4e4460327a327143b1d8308ce552c70e4178;hb=fc77dfd068b74f1ba81927c098b97667eb01e255;hp=b457bec94bef9cf5d2702df8767b6dd75a73c0c3;hpb=a96d51f58325f8429c5792ae554243de5628d62a;p=jalview.git diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd index b457bec..333a4e4 100755 --- a/schemas/vamsas.xsd +++ b/schemas/vamsas.xsd @@ -1,5 +1,28 @@ + + @@ -80,6 +103,11 @@ + + + Biotype of the mapping e.g. CdsToPeptide + + @@ -89,9 +117,15 @@ - - - + + + specifies a series of aligned codons from an associated DNA sequence alignment that when translated correspond to columns of a peptide alignment. + Element may have either all pos1,2,3 attributes specified, or none at all (indicating a gapped column with no translated peptide). + + + + + @@ -132,6 +166,20 @@ + + + + true for gene locus mapping, source=species, version=assembly, accession=chromosome + + + + + + + true for the representative accession for databases where multiple accessions map to the same entry (eg. Uniprot) + + + @@ -142,6 +190,13 @@ + + + + Biotype of the sequence (if known) + + + @@ -149,26 +204,59 @@ - - - + + + - - - + + + + + + + + + - - - - - - - - - + + + + + + + + height in pixels for the graph if this is a graph-type annotation. + + + + + + + + + + + is an autocalculated annotation row + + + is to be shown below the alignment - introduced in Jalview 2.8 for visualizing T-COFFEE alignment scores + + Optional string identifier used to group sets of annotation produced by a particular calculation. Values are opaque strings but have semantic meaning to Jalview's renderer, data importer and calculation system. +