X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fvamsas.xsd;h=72ac603d3a5195fcb5434494e21067f159605fcf;hb=refs%2Fheads%2Ffeature%2FJAL-3187viewstyleFlags;hp=dfee9145befc039e9842449fab84440fd163697c;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git

diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd
index dfee914..72ac603 100755
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -18,6 +18,11 @@
  * The Jalview Authors are detailed in the 'AUTHORS' file.
 -->
 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
+<!-- 
+	Java JAXB binding classes are generated by running command line tool xjc:
+ 	    xjc schemas/jalview.xsd -d src -p jalview.xml.binding.jalview
+ 	Note this also generates code for included schemas
+-->
 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" targetNamespace="www.vamsas.ac.uk/jalview/version2" elementFormDefault="qualified" attributeFormDefault="unqualified">
 	<xs:complexType name="VAMSAS">
 		<xs:sequence>
@@ -98,6 +103,11 @@
 							</xs:element>
 						</xs:choice>
 					</xs:sequence>
+					<xs:attribute name="mappingType" type="xs:string" use="optional">
+						<xs:annotation>
+							<xs:documentation>Biotype of the mapping e.g. CdsToPeptide</xs:documentation>
+						</xs:annotation>
+					</xs:attribute>
 				</xs:extension>
 			</xs:complexContent>	
 		</xs:complexType>
@@ -166,6 +176,13 @@
 							</xs:documentation>
 						</xs:annotation>
 					</xs:attribute>
+					<xs:attribute name="biotype" type="xs:string" use="optional">
+						<xs:annotation>
+							<xs:documentation>
+								Biotype of the sequence (if known)
+							</xs:documentation>
+						</xs:annotation>
+					</xs:attribute>
 				</xs:extension>
 			</xs:complexContent>
 		</xs:complexType>
@@ -185,6 +202,12 @@
 						<xs:attribute name="colour" type="xs:int" />
 					</xs:complexType>
 				</xs:element>
+				<xs:element name="property" minOccurs="0" maxOccurs="unbounded">
+					<xs:complexType>
+						<xs:attribute name="name" type="xs:string" />
+						<xs:attribute name="value" type="xs:string" />
+					</xs:complexType>
+				</xs:element>
 			</xs:sequence>
 			<xs:attribute name="graph" type="xs:boolean" use="required" />
 			<xs:attribute name="graphType" type="xs:int" use="optional" />