X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fvamsas.xsd;h=aeb9ee34f838cb76597885b07e1839d4bac6b2b7;hb=16bf6a28effe9a4552d933d0a909f633cd091be4;hp=fc1193fc19e56bbd9294508156fb07b427899e13;hpb=6e8c9aa0b98a277506c1bdfd5fda0f51c5d82f26;p=jalview.git

diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd
index fc1193f..aeb9ee3 100755
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
@@ -3,34 +3,6 @@
 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" targetNamespace="www.vamsas.ac.uk/jalview/version2" elementFormDefault="qualified" attributeFormDefault="unqualified">
 	<xs:complexType name="VAMSAS">
 		<xs:sequence>
-			<xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
-				<xs:complexType>
-					<xs:sequence>
-						<xs:element name="Annotation" minOccurs="0">
-							<xs:complexType>
-								<xs:sequence>
-									<xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
-									<xs:element name="label" type="xs:string"/>
-									<xs:element name="description" type="xs:string" minOccurs="0"/>
-									<xs:element name="thresholdLine" minOccurs="0">
-										<xs:complexType>
-											<xs:attribute name="label" type="xs:string"/>
-											<xs:attribute name="value" type="xs:float"/>
-											<xs:attribute name="colour" type="xs:int"/>
-										</xs:complexType>
-									</xs:element>
-								</xs:sequence>
-								<xs:attribute name="graph" type="xs:boolean" use="required"/>
-								<xs:attribute name="graphType" type="xs:int" use="optional"/>
-								<xs:attribute name="sequenceRef" type="xs:string" use="optional"/>
-								<xs:attribute name="graphColour" type="xs:int" use="optional"/>
-								<xs:attribute name="graphGroup" type="xs:int" use="optional"/>
-							</xs:complexType>
-						</xs:element>
-						<xs:element ref="vamsas:SequenceSet"/>
-					</xs:sequence>
-				</xs:complexType>
-			</xs:element>
 			<xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
 			<xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
 		</xs:sequence>
@@ -38,7 +10,7 @@
 	<xs:element name="SequenceSet">
 		<xs:complexType>
 			<xs:sequence>
-				<xs:element name="Sequence" maxOccurs="unbounded">
+				<xs:element name="Sequence" minOccurs="0" maxOccurs="unbounded">
 					<xs:complexType>
 						<xs:complexContent>
 							<xs:extension base="vamsas:SequenceType">
@@ -58,14 +30,22 @@
 				<xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
 					<xs:complexType>
 						<xs:sequence>
-							<xs:element name="description" type="xs:string" minOccurs="0"/>
-							<xs:element name="status" type="xs:string" minOccurs="0"/>
 							<xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
+							<xs:element name="label" type="xs:string"/>
+							<xs:element name="description" type="xs:string" minOccurs="0"/>
+							<xs:element name="thresholdLine" minOccurs="0">
+								<xs:complexType>
+									<xs:attribute name="label" type="xs:string"/>
+									<xs:attribute name="value" type="xs:float"/>
+									<xs:attribute name="colour" type="xs:int"/>
+								</xs:complexType>
+							</xs:element>
 						</xs:sequence>
-						<xs:attribute name="type" type="xs:string" use="required"/>
-						<xs:attribute name="end" type="xs:string" use="required"/>
-						<xs:attribute name="begin" type="xs:string" use="required"/>
-						<xs:attribute name="seqRef" type="xs:string" use="required"/>
+						<xs:attribute name="graph" type="xs:boolean" use="required"/>
+						<xs:attribute name="graphType" type="xs:int" use="optional"/>
+						<xs:attribute name="sequenceRef" type="xs:string" use="optional"/>
+						<xs:attribute name="graphColour" type="xs:int" use="optional"/>
+						<xs:attribute name="graphGroup" type="xs:int" use="optional"/>
 					</xs:complexType>
 				</xs:element>
 			</xs:sequence>
@@ -93,8 +73,8 @@
 	</xs:element>
 	<xs:complexType name="SequenceType">
 		<xs:sequence>
-			<xs:element name="sequence" type="xs:string"/>
-			<xs:element name="name" type="xs:string"/>
+			<xs:element name="sequence" type="xs:string" minOccurs="0"/>
+			<xs:element name="name" type="xs:string" minOccurs="0"/>
 		</xs:sequence>
 		<xs:attribute name="id" type="xs:string"/>
 		<xs:attribute name="description" type="xs:string"/>