X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fvamsas.xsd;h=b457bec94bef9cf5d2702df8767b6dd75a73c0c3;hb=a96d51f58325f8429c5792ae554243de5628d62a;hp=1a24509d345a22aa0e63500d6881bf0e1315a3ff;hpb=6951479b7dc56bd022ce2c370b7f88b5571004fd;p=jalview.git
diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd
index 1a24509..b457bec 100755
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
@@ -7,52 +7,191 @@
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+ developed after mapRangeType from http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes
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+ This effectively represents a java.util.MapList object
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+ a region from start to end inclusive
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+ a region from start to end inclusive
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+ number of dictionary symbol widths involved in each
+ mapped position on this sequence (for example, 3 for a dna sequence exon
+ region that is being mapped to a protein sequence). This is optional,
+ since the unit can be usually be inferred from the dictionary type of
+ each sequence involved in the mapping.
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+ number of dictionary symbol widths involved in each
+ mapped position on this sequence (for example, 3 for a dna sequence exon
+ region that is being mapped to a protein sequence). This is optional,
+ since the unit can be usually be inferred from the dictionary type of
+ each sequence involved in the mapping.
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+ Represent the jalview.datamodel.Mapping object - it also provides
+ a way of storing sequences that are mapped 'to' without adding them
+ to the sequence set (which will mean they are then added to the alignment too).
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+ The sequence whose dataset sequence is to be referenced here
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+ a Mapping entry and an associated protein sequence
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+ internal jalview id for the dnasq for this mapping.
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+ dataset sequence id for this sequence. Will be created as union of sequences.
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+ reference to set where jalview will gather the dataset sequences for all sequences in the set.
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