X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fvamsas.xsd;h=c144d9781e0d7db6d5d6eb3810916a6a6df02482;hb=153dd62dc91da13ae732600e6ea55ddbe15eab39;hp=660b3afbfd0d9185b640b98293f5b00a9d6f3b85;hpb=cd07a161a10680208029f76aa46710c1032aae46;p=jalview.git

diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd
index 660b3af..c144d97 100755
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
@@ -1,4 +1,21 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+   * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+   * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+   * 
+   * This file is part of Jalview.
+   * 
+   * Jalview is free software: you can redistribute it and/or
+   * modify it under the terms of the GNU General Public License 
+   * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+   * 
+   * Jalview is distributed in the hope that it will be useful, but 
+   * WITHOUT ANY WARRANTY; without even the implied warranty 
+   * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+   * PURPOSE.  See the GNU General Public License for more details.
+   * 
+   * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.ac.uk/jalview/version2" targetNamespace="www.vamsas.ac.uk/jalview/version2" elementFormDefault="qualified" attributeFormDefault="unqualified">
 	<xs:complexType name="VAMSAS">
@@ -155,26 +172,46 @@
 	<xs:element name="Annotation">
 		<xs:complexType>
 			<xs:sequence>
-				<xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
-				<xs:element name="label" type="xs:string"/>
-				<xs:element name="description" type="xs:string" minOccurs="0"/>
+				<xs:element ref="vamsas:annotationElement" minOccurs="0"
+					maxOccurs="unbounded" />
+				<xs:element name="label" type="xs:string" />
+				<xs:element name="description" type="xs:string"
+					minOccurs="0" />
 				<xs:element name="thresholdLine" minOccurs="0">
 					<xs:complexType>
-						<xs:attribute name="label" type="xs:string"/>
-						<xs:attribute name="value" type="xs:float"/>
-						<xs:attribute name="colour" type="xs:int"/>
+						<xs:attribute name="label" type="xs:string" />
+						<xs:attribute name="value" type="xs:float" />
+						<xs:attribute name="colour" type="xs:int" />
 					</xs:complexType>
 				</xs:element>
 			</xs:sequence>
-			<xs:attribute name="graph" type="xs:boolean" use="required"/>
-			<xs:attribute name="graphType" type="xs:int" use="optional"/>
-			<xs:attribute name="sequenceRef" type="xs:string" use="optional"/>
-			<xs:attribute name="graphColour" type="xs:int" use="optional"/>
-			<xs:attribute name="graphGroup" type="xs:int" use="optional"/>
-			<xs:attribute name="id" type="xs:string" use="optional"/>
-			<xs:attribute name="scoreOnly" type="xs:boolean" use="optional" default="false"/>
-			<xs:attribute name="score" type="xs:double" use="optional"/>
-			<xs:attribute name="visible" type="xs:boolean" use="optional"/>
+			<xs:attribute name="graph" type="xs:boolean" use="required" />
+			<xs:attribute name="graphType" type="xs:int" use="optional" />
+			<xs:attribute name="sequenceRef" type="xs:string"
+				use="optional" />
+			<xs:attribute name="groupRef" type="xs:string"
+				use="optional" />
+			<xs:attribute name="graphColour" type="xs:int"
+				use="optional" />
+			<xs:attribute name="graphGroup" type="xs:int"
+				use="optional" />
+			<xs:attribute name="id" type="xs:string" use="optional" />
+			<xs:attribute name="scoreOnly" type="xs:boolean"
+				use="optional" default="false" />
+			<xs:attribute name="score" type="xs:double" use="optional" />
+			<xs:attribute name="visible" type="xs:boolean"
+				use="optional" />
+			<xs:attribute name="centreColLabels" type="xs:boolean"
+				use="optional" />
+			<xs:attribute name="scaleColLabels" type="xs:boolean"
+				use="optional" />
+			<xs:attribute name="showAllColLabels" type="xs:boolean"
+				use="optional" />
+
+
+			<xs:attribute name="autoCalculated" type="xs:boolean" use="optional" default="false">
+			<xs:annotation><xs:documentation>is an autocalculated annotation row</xs:documentation>
+			</xs:annotation></xs:attribute>
 		</xs:complexType>
 	</xs:element>	
 	<xs:element name="SequenceSet">