X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fvamsas.xsd;h=f4380630fc72b0c3ad646745ed44f2abe1671c8b;hb=c636e45f030b140229ec8d0748245da4a53411b5;hp=ace83dd57cb42890dbed476ba62c2b4b034dad57;hpb=65bf5e3d27d9df076e3c1af6bbf5178b06fb0479;p=jalview.git
diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd
index ace83dd..f438063 100755
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
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+ developed after mapRangeType from http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes
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+ This effectively represents a java.util.MapList object
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+ a region from start to end inclusive
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+ a region from start to end inclusive
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+ number of dictionary symbol widths involved in each
+ mapped position on this sequence (for example, 3 for a dna sequence exon
+ region that is being mapped to a protein sequence). This is optional,
+ since the unit can be usually be inferred from the dictionary type of
+ each sequence involved in the mapping.
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+ number of dictionary symbol widths involved in each
+ mapped position on this sequence (for example, 3 for a dna sequence exon
+ region that is being mapped to a protein sequence). This is optional,
+ since the unit can be usually be inferred from the dictionary type of
+ each sequence involved in the mapping.
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+ Represent the jalview.datamodel.Mapping object - it also provides
+ a way of storing sequences that are mapped 'to' without adding them
+ to the sequence set (which will mean they are then added to the alignment too).
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+ The sequence whose dataset sequence is to be referenced here
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+ specifies a series of aligned codons from an associated DNA sequence alignment that when translated correspond to columns of a peptide alignment.
+ Element may have either all pos1,2,3 attributes specified, or none at all (indicating a gapped column with no translated peptide).
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+ a Mapping entry and an associated protein sequence
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+ internal jalview id for the dnasq for this mapping.
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+ dataset sequence id for this sequence. Will be created as union of sequences.
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+ is an autocalculated annotation row
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+ reference to set where jalview will gather the dataset sequences for all sequences in the set.
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