X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fvamsas.xsd;h=fedbae3fc4c2819fce08013443252d9cfcab9c33;hb=373ea2f39547c5432fc2922e5d958e1955de14e8;hp=22b7aac75111e71bb35d2817f5f7ab8ad52bb6c5;hpb=3ee6d0992179d26e9feffcea304c5e6149a5965d;p=jalview.git
diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd
index 22b7aac..fedbae3 100755
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
@@ -103,6 +103,11 @@
+
+
+ Biotype of the mapping e.g. CdsToPeptide
+
+
@@ -161,6 +166,20 @@
+
+
+
+ true for gene locus mapping, source=species, version=assembly, accession=chromosome
+
+
+
+
+
+
+ true for the representative accession for databases where multiple accessions map to the same entry (eg. Uniprot)
+
+
+
@@ -171,6 +190,13 @@
+
+
+
+ Biotype of the sequence (if known)
+
+
+
@@ -190,12 +216,10 @@
-
-
-
-
-
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+
@@ -282,4 +306,56 @@
+
+
+
+
+ serialised representation of matrix as one or
+ more sets of comma separated values
+
+
+
+
+ Comma separated series of longs formed from
+ bitsets defining partitions on the rows/columns of the matrix
+
+
+
+
+
+ tree computed for this
+
+
+
+
+
+ mapping from the matrix row and column positions to
+ associated reference frame
+
+
+
+
+
+
+
+
+
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+
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+
+
+