X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2Fvamsas.xsd;h=fedbae3fc4c2819fce08013443252d9cfcab9c33;hb=cc3341f9d1465b0226d184be4216d022a62e5cee;hp=660b3afbfd0d9185b640b98293f5b00a9d6f3b85;hpb=cd07a161a10680208029f76aa46710c1032aae46;p=jalview.git diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd index 660b3af..fedbae3 100755 --- a/schemas/vamsas.xsd +++ b/schemas/vamsas.xsd @@ -1,5 +1,28 @@ + + @@ -80,6 +103,11 @@ + + + Biotype of the mapping e.g. CdsToPeptide + + @@ -138,6 +166,20 @@ + + + + true for gene locus mapping, source=species, version=assembly, accession=chromosome + + + + + + + true for the representative accession for databases where multiple accessions map to the same entry (eg. Uniprot) + + + @@ -148,6 +190,13 @@ + + + + Biotype of the sequence (if known) + + + @@ -155,26 +204,57 @@ - - - + + + - - - + + + + + + - - - - - - - - - + + + + + + + + height in pixels for the graph if this is a graph-type annotation. + + + + + + + + + + + is an autocalculated annotation row + + + is to be shown below the alignment - introduced in Jalview 2.8 for visualizing T-COFFEE alignment scores + + Optional string identifier used to group sets of annotation produced by a particular calculation. Values are opaque strings but have semantic meaning to Jalview's renderer, data importer and calculation system. + @@ -226,4 +306,56 @@ + + + + + serialised representation of matrix as one or + more sets of comma separated values + + + + + Comma separated series of longs formed from + bitsets defining partitions on the rows/columns of the matrix + + + + + + tree computed for this + + + + + + mapping from the matrix row and column positions to + associated reference frame + + + + + + + + + + + + + + + + + +