X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=schemas%2FvamsasJvV1.xsd;h=ae98e13b18e077ed07ae1a63bee241355e1e570f;hb=2123f8ad0cc51b9f58d5d2820fa54ed03a8f3b22;hp=69477b0c9d3b2fe9479e21a2a46f6ae3c4bea9ff;hpb=2de8acfae59aced665e4c37ad0f7dcc2ed68818e;p=jalview.git

diff --git a/schemas/vamsasJvV1.xsd b/schemas/vamsasJvV1.xsd
index 69477b0..ae98e13 100644
--- a/schemas/vamsasJvV1.xsd
+++ b/schemas/vamsasJvV1.xsd
@@ -1,93 +1,92 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!--
-  Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
-  Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-  
-  This program is free software; you can redistribute it and/or
-  modify it under the terms of the GNU General Public License
-  as published by the Free Software Foundation; either version 2
-  of the License, or (at your option) any later version.
-  
-  This program is distributed in the hope that it will be useful,
-  but WITHOUT ANY WARRANTY; without even the implied warranty of
-  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-  GNU General Public License for more details.
-  
-  You should have received a copy of the GNU General Public License
-  along with this program; if not, write to the Free Software
-  Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
--->
-
-<!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
-<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
-	<xs:complexType name="VAMSAS">
-		<xs:sequence>
-			<xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
-				<xs:complexType>
-					<xs:sequence>
-						<xs:element name="Annotation" minOccurs="0">
-							<xs:complexType>
-								<xs:sequence>
-									<xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
-									<xs:element name="label" type="xs:string"/>
-									<xs:element name="description" type="xs:string"/>
-								</xs:sequence>
-								<xs:attribute name="graph" type="xs:boolean" use="required"/>
-								<xs:attribute name="graphType" type="xs:int" use="optional"/>
-							</xs:complexType>
-						</xs:element>
-						<xs:element ref="vamsas:SequenceSet"/>
-					</xs:sequence>
-				</xs:complexType>
-			</xs:element>
-			<xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
-			<xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
-		</xs:sequence>
-	</xs:complexType>
-	<xs:element name="SequenceSet">
-		<xs:complexType>
-			<xs:sequence>
-				<xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>
-				<xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
-					<xs:complexType>
-						<xs:sequence>
-							<xs:element name="description" type="xs:string" minOccurs="0"/>
-							<xs:element name="status" type="xs:string" minOccurs="0"/>
-							<xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
-						</xs:sequence>
-						<xs:attribute name="type" type="xs:string" use="required"/>
-						<xs:attribute name="end" type="xs:string" use="required"/>
-						<xs:attribute name="begin" type="xs:string" use="required"/>
-						<xs:attribute name="seqRef" type="xs:string" use="required"/>
-					</xs:complexType>
-				</xs:element>
-			</xs:sequence>
-			<xs:attribute name="gapChar" type="xs:string" use="required"/>
-			<xs:attribute name="aligned" type="xs:boolean" use="optional"/>
-		</xs:complexType>
-	</xs:element>
-	<xs:element name="annotationElement">
-		<xs:complexType>
-			<xs:sequence>
-				<xs:element name="displayCharacter" type="xs:string"/>
-				<xs:element name="description" type="xs:string"/>
-				<xs:element name="secondaryStructure">
-					<xs:simpleType>
-						<xs:restriction base="xs:string">
-							<xs:length value="1"/>
-						</xs:restriction>
-					</xs:simpleType>
-				</xs:element>
-				<xs:element name="value" type="xs:float"/>
-			</xs:sequence>
-			<xs:attribute name="position" type="xs:int" use="required"/>
-		</xs:complexType>
-	</xs:element>
-	<xs:complexType name="SequenceType">
-		<xs:sequence>
-			<xs:element name="sequence" type="xs:string"/>
-			<xs:element name="name" type="xs:string"/>
-		</xs:sequence>
-		<xs:attribute name="id" type="xs:string"/>
-	</xs:complexType>
-</xs:schema>
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+-->
+<!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
+<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="www.vamsas.org" targetNamespace="www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
+	<xs:complexType name="VAMSAS">
+		<xs:sequence>
+			<xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
+				<xs:complexType>
+					<xs:sequence>
+						<xs:element name="Annotation" minOccurs="0">
+							<xs:complexType>
+								<xs:sequence>
+									<xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
+									<xs:element name="label" type="xs:string"/>
+									<xs:element name="description" type="xs:string"/>
+								</xs:sequence>
+								<xs:attribute name="graph" type="xs:boolean" use="required"/>
+								<xs:attribute name="graphType" type="xs:int" use="optional"/>
+							</xs:complexType>
+						</xs:element>
+						<xs:element ref="vamsas:SequenceSet"/>
+					</xs:sequence>
+				</xs:complexType>
+			</xs:element>
+			<xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
+			<xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
+		</xs:sequence>
+	</xs:complexType>
+	<xs:element name="SequenceSet">
+		<xs:complexType>
+			<xs:sequence>
+				<xs:element name="Sequence" type="vamsas:SequenceType" maxOccurs="unbounded"/>
+				<xs:element name="Annotation" minOccurs="0" maxOccurs="unbounded">
+					<xs:complexType>
+						<xs:sequence>
+							<xs:element name="description" type="xs:string" minOccurs="0"/>
+							<xs:element name="status" type="xs:string" minOccurs="0"/>
+							<xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
+						</xs:sequence>
+						<xs:attribute name="type" type="xs:string" use="required"/>
+						<xs:attribute name="end" type="xs:string" use="required"/>
+						<xs:attribute name="begin" type="xs:string" use="required"/>
+						<xs:attribute name="seqRef" type="xs:string" use="required"/>
+					</xs:complexType>
+				</xs:element>
+			</xs:sequence>
+			<xs:attribute name="gapChar" type="xs:string" use="required"/>
+			<xs:attribute name="aligned" type="xs:boolean" use="optional"/>
+		</xs:complexType>
+	</xs:element>
+	<xs:element name="annotationElement">
+		<xs:complexType>
+			<xs:sequence>
+				<xs:element name="displayCharacter" type="xs:string"/>
+				<xs:element name="description" type="xs:string"/>
+				<xs:element name="secondaryStructure">
+					<xs:simpleType>
+						<xs:restriction base="xs:string">
+							<xs:length value="1"/>
+						</xs:restriction>
+					</xs:simpleType>
+				</xs:element>
+				<xs:element name="value" type="xs:float"/>
+			</xs:sequence>
+			<xs:attribute name="position" type="xs:int" use="required"/>
+		</xs:complexType>
+	</xs:element>
+	<xs:complexType name="SequenceType">
+		<xs:sequence>
+			<xs:element name="sequence" type="xs:string"/>
+			<xs:element name="name" type="xs:string"/>
+		</xs:sequence>
+		<xs:attribute name="id" type="xs:string"/>
+	</xs:complexType>
+</xs:schema>