X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2FMCview%2FAppletPDBCanvas.java;fp=src%2FMCview%2FAppletPDBCanvas.java;h=993913136e2095b34f59a59c8935fd18b4ac46d0;hb=8a6fa9ea9900d0f106529c3f6283e7f9d76dd2cb;hp=543d6802240037f8e121a081a19c059524b9ae86;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/MCview/AppletPDBCanvas.java b/src/MCview/AppletPDBCanvas.java
index 543d680..9939131 100755
--- a/src/MCview/AppletPDBCanvas.java
+++ b/src/MCview/AppletPDBCanvas.java
@@ -177,8 +177,10 @@ public class AppletPDBCanvas extends Panel implements MouseListener,
       // the start and end points.
       // Align the sequence to the pdb
       // TODO: DNa/Pep switch
-      AlignSeq as = new AlignSeq(sequence, ((PDBChain) pdb.chains
-              .elementAt(i)).sequence, ((PDBChain) pdb.chains.elementAt(i)).isNa ? AlignSeq.DNA : AlignSeq.PEP);
+      AlignSeq as = new AlignSeq(sequence,
+              ((PDBChain) pdb.chains.elementAt(i)).sequence,
+              ((PDBChain) pdb.chains.elementAt(i)).isNa ? AlignSeq.DNA
+                      : AlignSeq.PEP);
       as.calcScoreMatrix();
       as.traceAlignment();
       PrintStream ps = new PrintStream(System.out)
@@ -1102,7 +1104,8 @@ public class AppletPDBCanvas extends Panel implements MouseListener,
   // /StructureListener
   public String[] getPdbFile()
   {
-    return new String[] { pdbentry.getFile() };
+    return new String[]
+    { pdbentry.getFile() };
   }
 
   String lastMessage;